[Home] | [Total List]

[193354_s_at]

Description Y48A6A.1 /REP_DB=WormBase Gene ID /WP=CE19183 /GEN=zig-5 /TR=Q9XXD7 /GB=CAA19522.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=IG (immunoglobulin) superfamily
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 77      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 12      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2387
1 2 3 4 range
A 1230.5
(-0.9)
P 		647.4
(-2.4)
P 		427.9
(-3)
P 		2739.4
(3)
P 		2312
B 1322.6
(-0.5)
P 		467.7
(-2.8)
P 		409.5
(-3)
P 		2592.8
(3)
P 		2183
C 1161.6
(-0.7)
P 		542
(-2.5)
P 		352.7
(-3)
P 		2443.6
(3)
P 		2091
avr 1238.2
(-0.7) 		552.4
(-2.6) 		396.7
(-3) 		2591.9
(3) 		2195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 664
1 2 3 4 5 6 range
A 498.9
(-1.3)
P 		494.1
(-1.3)
P 		309.9
(-3)
P 		580.4
(-0.6)
P 		494.4
(-1.3)
P 		973.9
(3)
P 		664
B 445.1
(-1.5)
P 		592.4
(0.1)
P 		313.2
(-3)
P 		580
(-0)
P 		676
(1)
P 		854.3
(3)
P 		541
C 568.4
(-0.7)
P 		585.9
(-0.4)
P 		415
(-3)
P 		575.8
(-0.6)
P 		572
(-0.6)
P 		810.7
(3)
P 		396
avr 504.1
(-1.2) 		557.5
(-0.6) 		346
(-3) 		578.7
(-0.4) 		580.8
(-0.4) 		879.6
(3) 		534
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 458
1 2 3 4 range
A 448
(3)
P 		140.5
(-2.5)
P 		111.9
(-3)
P 		401
(2.2)
P 		336
B 421.8
(1.3)
P 		115.5
(-2.7)
P 		94.9
(-3)
P 		552.5
(3)
P 		458
C 384.5
(2.4)
P 		155.8
(-2.3)
P 		122.9
(-3)
P 		412
(3)
P 		289
avr 418.1
(2.4) 		137.3
(-2.5) 		109.9
(-3) 		455.2
(3) 		345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 92
(-2.1)
P 		175.7
(0.8)
P 		67.5
(-3)
P 		147.2
(-0.2)
P 		149.2
(-0.1)
P 		237.1
(3)
P 		170
B 154.9
(-1.1)
P 		197.2
(-0)
P 		76.1
(-3)
P 		153.6
(-1.1)
P 		274.6
(1.9)
P 		318.6
(3)
P 		243
C 210.7
(0.8)
P 		178.8
(-0.4)
P 		105.6
(-3)
P 		115.8
(-2.6)
P 		185.1
(-0.1)
P 		271.4
(3)
P 		166
avr 152.5
(-0.8) 		183.9
(0.1) 		83.1
(-3) 		138.9
(-1.3) 		203
(0.7) 		275.7
(3) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193354_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7426
Sequence Type Exemplar sequence
Representative Public ID Y48A6A.1 NCBI
Target Description Y48A6A.1 /REP_DB=WormBase Gene ID /WP=CE19183 /GEN=zig-5 /TR=Q9XXD7 /GB=CAA19522.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=IG (immunoglobulin) superfamily
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067004 NCBI Caenorhabditis elegans 2 (Zwei) IG-domain protein family member (zig-5) (zig-5) mRNA, complete cds. 11/11 None
SNAP00000024533 ENSEMBL cdna:SNAP chromosome:CEL140:III:10951203:10953383:-1 11/11 None
GENEFINDER00000024535 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10951203:10953382:-1 11/11 None
Y48A6A.1 ENSEMBL cdna:known chromosome:CEL140:III:10951102:10953382:-1 gene:Y48A6A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10951198-10953349(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol zig-5
Ensembl Y48A6A.1
Entrez Gene 176527 Entrez gene
SwissProt Q9XXD7 EMBL-EBI
WormBase CE31735 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19522 Hypothetical protein Y48A6A.1 [Caenorhabditis elegans] ref|NP_499405.4| 2 (Zwei) IG-domain protein family member (zig-5) [Caenorhabditis elegans] 1.0E-148
blast CAA19522 Hypothetical protein Y48A6A.1 [Caenorhabditis elegans] ref|NP_499405.4| 2 (Zwei) IG-domain protein family member (zig-5) [Caenorhabditis elegans] 1.0E-132
blast AAL59610 secreted 2-immunoglobulin-domain protein ZIG-5 [Caenorhabditis elegans] 1.0E-131
blast CAE71367 Hypothetical protein CBG18271 [Caenorhabditis briggsae] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.0E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.085
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.0E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.085
Sequence
Target Sequence 
>C. ELEGANS:193354_S_AT
tctccgcagccgacaatcgtatggtatcatcgtggaaaacgtgtggacagccatccggct
gctcattttgagacccttctctccgccactaaccttggacagtctgttgtagaatctgcg
cttcgaatcgactgcctcgacgagcgtacggcgggcgagtatttctgcgaagccacgtca
ccatgcactcaaccagtcgtcacttcgtcaacagtcactattaataaagcgccaaaatcg
ataacgggaacatgcaaatcgattcggcaaccactcgaatcgccgcccatcgtctccgat
ttcacactttcacgaatcgagttaccgggcggtgttgctcaattggcgtgccgtgttcgc
ggagttccaacgccaaaaacgaaatggttcaagattgaggaggacgagtcgttgagcaca
attgatggacaacccaattatatgcacctttcaaacggtgatctactaatagttggtgac
gaggaaacaatctcggaatcgttccgatgcgtcgcttcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCGCAGCCGACAATCGTATGGT 58 611 235 Antisense
GAAAACGTGTGGACAGCCATCCGGC 337 353 269 Antisense
ATCCGGCTGCTCATTTTGAGACCCT 428 39 287 Antisense
GCCACTAACCTTGGACAGTCTGTTG 3 279 319 Antisense
AGAATCTGCGCTTCGAATCGACTGC 652 73 345 Antisense
GGCGGGCGAGTATTTCTGCGAAGCC 18 541 384 Antisense
TCTCCGATTTCACACTTTCACGAAT 463 609 527 Antisense
CGGTGTTGCTCAATTGGCGTGCCGT 128 245 564 Antisense
TGTTCGCGGAGTTCCAACGCCAAAA 499 561 588 Antisense
GACAACCCAATTATATGCACCTTTC 117 365 662 Antisense
ATCGTTCCGATGCGTCGCTTCAAAT 453 35 732 Antisense
Sequence Source Affymetrix Proprietary Database