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[193353_s_at] Ank repeat, BRCA1 C Terminus (BRCT) domain

Description F26D2.10 /REP_DB=WormBase Gene ID /WP=CE18640 /TR=Q9XV62 /GB=CAB04180.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat, BRCA1 C Terminus (BRCT) domain
Cluster 6grp_total > 77      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 5.7
(-2.7)
A 		4.2
(-3)
A 		26.4
(2.2)
A 		30
(3)
A 		26
B 4.2
(-3)
A 		9.3
(-2)
A 		16.3
(-0.7)
A 		35.2
(3)
A 		31
C 5.1
(-2.9)
A 		13.5
(-1.3)
A 		4.8
(-3)
A 		35.5
(3)
A 		31
avr 5
(-3) 		9
(-2.2) 		15.8
(-0.7) 		33.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 9.1
(-2.4)
A 		5.4
(-2.9)
A 		7.2
(-2.6)
A 		4.6
(-3)
A 		31.6
(0.9)
A 		46.2
(3)
A 		42
B 6.2
(-2.6)
A 		5
(-2.8)
A 		4.3
(-2.9)
A 		3.9
(-3)
A 		13.2
(-1.6)
A 		43.3
(3)
A 		39
C 4.4
(-3)
A 		18.2
(-1.3)
A 		23.3
(-0.7)
A 		15.4
(-1.7)
A 		12.6
(-2)
A 		54.1
(3)
A 		50
avr 6.6
(-3) 		9.5
(-2.6) 		11.6
(-2.3) 		8
(-2.8) 		19.1
(-1.2) 		47.9
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.1
(-1.8)
A 		0.9
(-3)
A 		6.9
(3)
A 		4.4
(0.5)
A 		6
B 1.3
(-3)
A 		2.3
(-2)
A 		3.8
(-0.6)
A 		7.5
(3)
A 		6
C 1.7
(-3)
A 		3.9
(0.1)
A 		1.7
(-3)
A 		6
(3)
A 		4
avr 1.7
(-3) 		2.4
(-2) 		4.1
(0.3) 		6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.7
(-2.7)
A 		1.9
(-2.6)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		9.5
(1.9)
A 		11.3
(3)
A 		10
B 2.2
(-2.5)
A 		1.7
(-2.7)
A 		1
(-3)
A 		1
(-3)
A 		5.4
(-1.3)
A 		16.2
(3)
A 		15
C 1.6
(-3)
A 		5.5
(-1.6)
A 		5.9
(-1.4)
A 		3.1
(-2.5)
A 		4.1
(-2.1)
A 		18.1
(3)
A 		17
avr 1.8
(-3) 		3
(-2.5) 		2.8
(-2.6) 		1.8
(-3) 		6.3
(-1) 		15.2
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193353_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14234
Sequence Type Exemplar sequence
Representative Public ID F26D2.10 NCBI
Target Description F26D2.10 /REP_DB=WormBase Gene ID /WP=CE18640 /TR=Q9XV62 /GB=CAB04180.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat, BRCA1 C Terminus (BRCT) domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074751 NCBI Caenorhabditis elegans F26D2.10 (F26D2.10) mRNA, complete cds. 11/11 None
SNAP00000037739 ENSEMBL cdna:SNAP chromosome:CEL140:V:16427437:16431733:-1 11/11 None
GENEFINDER00000037744 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16421016:16431733:-1 11/11 None
F26D2.10 ENSEMBL cdna:known chromosome:CEL140:V:16427437:16431733:-1 gene:F26D2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16427436-16431733(-) 99.67 100.0
Public Domain and Genome References
Gene Title Ank repeat, BRCA1 C Terminus (BRCT) domain
Ensembl F26D2.10
Entrez Gene 180104 Entrez gene
SwissProt Q9XV62 EMBL-EBI
WormBase CE18640 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04180 Hypothetical protein F26D2.10 [Caenorhabditis elegans] ref|NP_507152.1| F26D2.10 [Caenorhabditis elegans] 0.0
blast CAB04319 Hypothetical protein F36D3.5 [Caenorhabditis elegans] ref|NP_507181.1| F36D3.5 [Caenorhabditis elegans] 0.0
blast CAB05800 Hypothetical protein T08G3.7 [Caenorhabditis elegans] ref|NP_507164.1| T08G3.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.2E-28
Pfam IPR001357 EMBL-EBI BRCT 3.2E-13
Pfam IPR002110 EMBL-EBI Ankyrin 4.9E-8
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 3.8E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507152.1 1 818-840
F26D2.10 1 818-840
SNAP00000037739 1 818-840
GENEFINDER00000037744 8 818-840,1124-1143,1197-1219,1226-1247,1275-1297,1318-1337,1436-1458,1470-1492
Sequence
Target Sequence 
>C. ELEGANS:193353_S_AT
gatgaagcagcaccaaacacaacccatgttattgttaagacggatgagaatggcgttctg
gacactgacaatcttgaccttctgttttggatgttcaatggagcgataattgtcaaagaa
aaatggatgatcgattgcctgaacgatgagaagcttattgagcaagattcgaagtatttg
gtcgacagtgtcaaatacaaaggatccacttttaagactgttcttcagtggagtgaagcc
atggcaaagggagctattccatatctgtatggggtatatacagcaattgtcatgaaggaa
tgcaagaatctattgacattgaatactcttgtggcagctcatggtggtgttgtgatggat
accttcccaggaaaggagctcttcaacgttggatctcgcccgtatcaccatgcaaatctc
gggccgctgtttttgatccacgatggaacgatcaatttgaatgtctaccaatcggatcct
gac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAAGCAGCACCAAACACAACCC 42 413 3073 Antisense
GAATGGCGTTCTGGACACTGACAAT 580 331 3120 Antisense
GACACTGACAATCTTGACCTTCTGT 596 367 3133 Antisense
GACCTTCTGTTTTGGATGTTCAATG 573 383 3148 Antisense
AAGGATCCACTTTTAAGACTGTTCT 13 161 3272 Antisense
GAATACTCTTGTGGCAGCTCATGGT 118 327 3393 Antisense
GTGGCAGCTCATGGTGGTGTTGTGA 299 489 3403 Antisense
GTGTTGTGATGGATACCTTCCCAGG 235 483 3419 Antisense
CGTATCACCATGCAAATCTCGGGCC 546 247 3473 Antisense
AAATCTCGGGCCGCTGTTTTTGATC 685 115 3486 Antisense
GAATGTCTACCAATCGGATCCTGAC 446 331 3531 Antisense
Sequence Source Affymetrix Proprietary Database