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[193352_at] 7 transmembrane receptor (rhodopsin family)

Description C16D6.2 /REP_DB=WormBase Gene ID /WP=CE08231 /TR=O62062 /GB=CAB03888.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 26      4grp_total > 22      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 104.1
(1.7)
P 		80.4
(0.4)
A 		16.5
(-3)
A 		127.9
(3)
A 		111
B 133.8
(3)
P 		72.5
(0)
A 		10
(-3)
A 		119.7
(2.3)
A 		124
C 143.6
(3)
P 		24.3
(-2.8)
A 		20.7
(-3)
A 		122.2
(2)
A 		123
avr 127.2
(3) 		59.1
(-0.7) 		15.7
(-3) 		123.3
(2.8) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 129.7
(3)
A 		92.3
(0.8)
P 		60.1
(-1.1)
A 		28.5
(-3)
A 		50.4
(-1.7)
A 		83.5
(0.3)
P 		101
B 122.5
(2.6)
P 		129
(3)
P 		56.8
(-1.4)
A 		63.3
(-1)
A 		45.1
(-2.1)
P 		30.8
(-3)
A 		98
C 54.6
(-1.6)
P 		76.8
(3)
A 		67.7
(1.1)
A 		47.8
(-3)
A 		52.7
(-2)
A 		59.2
(-0.6)
A 		29
avr 102.3
(3) 		99.4
(2.7) 		61.5
(-1.4) 		46.5
(-3) 		49.4
(-2.7) 		57.8
(-1.8) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 37.9
(3)
P 		17.5
(-0.6)
A 		4.3
(-3)
A 		18.7
(-0.4)
A 		34
B 42.7
(3)
P 		17.9
(-0.7)
A 		2.3
(-3)
A 		25.5
(0.4)
A 		40
C 47.5
(3)
P 		7
(-3)
A 		7.2
(-3)
A 		20.6
(-1)
A 		41
avr 42.7
(3) 		14.1
(-1.5) 		4.6
(-3) 		21.6
(-0.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 23.9
(0.9)
A 		32.8
(3)
P 		13.1
(-1.6)
A 		7.2
(-3)
A 		15.2
(-1.1)
A 		20.3
(0.1)
P 		26
B 42.6
(2.9)
P 		43
(3)
P 		13.8
(-2.6)
A 		16.8
(-2)
A 		18.3
(-1.7)
P 		11.5
(-3)
A 		32
C 20.2
(1.6)
P 		23.4
(3)
A 		17.2
(0.3)
A 		9.6
(-3)
A 		17
(0.2)
A 		19.8
(1.4)
A 		14
avr 28.9
(1.8) 		33.1
(3) 		14.7
(-2) 		11.2
(-3) 		16.8
(-1.5) 		17.2
(-1.4) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16965
Sequence Type Exemplar sequence
Representative Public ID C16D6.2 NCBI
Target Description C16D6.2 /REP_DB=WormBase Gene ID /WP=CE08231 /TR=O62062 /GB=CAB03888.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077700 NCBI Caenorhabditis elegans C16D6.2 (C16D6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000035348 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12537388:12540778:-1 11/11 None
SNAP00000035345 ENSEMBL cdna:SNAP chromosome:CEL140:X:12539308:12540778:-1 11/11 None
C16D6.2 ENSEMBL cdna:known chromosome:CEL140:X:12536934:12551597:-1 gene:C16D6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12539307-12540778(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl C16D6.2
Entrez Gene 182684 Entrez gene
SwissProt O62062 EMBL-EBI
WormBase CE37317 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
4983 neuropeptide Y receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03888 Hypothetical protein C16D6.2 [Caenorhabditis elegans] ref|NP_510101.2| C16D6.2 [Caenorhabditis elegans] 0.0
blast CAE57235 Hypothetical protein CBG00112 [Caenorhabditis briggsae] 0.0
blast CAH04724 Hypothetical protein C53C7.1b [Caenorhabditis elegans] ref|NP_001024488.1| C53C7.1b [Caenorhabditis elegans] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.6E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510101.2 7 30-52,64-86,101-123,143-162,190-212,256-278,293-315
C16D6.2 7 30-52,64-86,101-123,143-162,190-212,256-278,293-315
GENEFINDER00000035348 7 30-52,64-86,101-123,143-162,190-212,256-278,293-315
SNAP00000035345 7 30-52,64-86,101-123,143-162,190-212,256-278,293-315
Sequence
Target Sequence 
>C. ELEGANS:193352_AT
gcagctctgatgtttcttcagctcgtcattccgcttaccatcatcatcatatcctacact
gcgatttctttgaagatcggacaaagcatgattctcaaaggggcgaaaaagcaaaaaaca
gacaattgggaaatggaattaagtgatcaacaaagaatcgctgtgaagagaagacaaaga
actaatagaatgcttattggtatggtagtcgcattcgcttgcagctggatttggtcagtg
acgttcaacattctgagggactatgaatatttgccagagctcatcaaaactcaagaatat
atctttggaattgctacacattgcattgcaatgacctcaacggtatggaacccgttactc
tacgcagtgctcaacctccaactgcgtgcagcattcattgacctgatgcctcactggctt
cgtcgtcatttaaacctggaaggagacaacagctctccattgctcaaccatccgacgatg
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCTCTGATGTTTCTTCAGCTCG 241 313 589 Antisense
ATCATATCCTACACTGCGATTTCTT 289 31 634 Antisense
TATGGTAGTCGCATTCGCTTGCAGC 68 655 789 Antisense
GTGACGTTCAACATTCTGAGGGACT 263 483 826 Antisense
TTGCATTGCAATGACCTCAACGGTA 418 673 909 Antisense
GGTATGGAACCCGTTACTCTACGCA 343 499 930 Antisense
AACCTCCAACTGCGTGCAGCATTCA 574 147 961 Antisense
GCAGCATTCATTGACCTGATGCCTC 472 313 976 Antisense
GGCTTCGTCGTCATTTAAACCTGGA 108 535 1004 Antisense
GGAGACAACAGCTCTCCATTGCTCA 309 519 1030 Antisense
CATTGCTCAACCATCCGACGATGAC 236 217 1046 Antisense
Sequence Source Affymetrix Proprietary Database