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[193347_at] 7 transmembrane receptor (rhodopsin family)

Description F14F4.1 /REP_DB=WormBase Gene ID /WP=CE17670 /TR=O62169 /GB=CAA16265.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 04      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 107.5
(3)
A 		22
(-2.6)
A 		16
(-3)
A 		24.2
(-2.5)
A 		92
B 143.3
(2.5)
A 		42.6
(-2.1)
A 		22.3
(-3)
A 		155.1
(3)
A 		133
C 89.5
(-0.9)
A 		35.7
(-3)
A 		41.8
(-2.8)
A 		190.9
(3)
A 		155
avr 113.4
(2.4) 		33.4
(-2.6) 		26.7
(-3) 		123.4
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 96.8
(3)
A 		54.9
(-1)
A 		43.6
(-2.1)
A 		80.6
(1.5)
A 		83.1
(1.7)
A 		34
(-3)
A 		63
B 107.9
(3)
A 		64.1
(-0.5)
A 		32.5
(-3)
A 		77
(0.5)
A 		48
(-1.8)
A 		57.7
(-1)
A 		75
C 46.8
(-0.7)
A 		103.1
(3)
A 		12.9
(-3)
A 		18.7
(-2.6)
A 		35.1
(-1.5)
A 		20.2
(-2.5)
A 		90
avr 83.8
(3) 		74
(1.9) 		29.7
(-3) 		58.8
(0.2) 		55.4
(-0.1) 		37.3
(-2.2) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 39.1
(3)
A 		4.8
(-2.8)
A 		4.2
(-2.9)
A 		3.5
(-3)
A 		36
B 45.7
(3)
A 		10.5
(-2.2)
A 		5.2
(-3)
A 		33.1
(1.1)
A 		41
C 29.6
(2.3)
A 		10.3
(-3)
A 		14.6
(-1.8)
A 		32.2
(3)
A 		22
avr 38.1
(3) 		8.5
(-2.9) 		8
(-3) 		22.9
(-0) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 17.9
(0.4)
A 		19.5
(1)
A 		9.5
(-2.6)
A 		20.4
(1.3)
A 		25.1
(3)
A 		8.3
(-3)
A 		17
B 37.5
(3)
A 		21.3
(-0.3)
A 		7.9
(-3)
A 		20.4
(-0.5)
A 		19.5
(-0.6)
A 		21.5
(-0.2)
A 		30
C 17.3
(-0)
A 		31.5
(3)
A 		3.3
(-3)
A 		3.8
(-2.9)
A 		11.4
(-1.3)
A 		6.8
(-2.3)
A 		28
avr 24.2
(3) 		24.1
(3) 		6.9
(-3) 		14.9
(-0.2) 		18.7
(1.1) 		12.2
(-1.2) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17926
Sequence Type Exemplar sequence
Representative Public ID F14F4.1 NCBI
Target Description F14F4.1 /REP_DB=WormBase Gene ID /WP=CE17670 /TR=O62169 /GB=CAA16265.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078076 NCBI Caenorhabditis elegans F14F4.1 (F14F4.1) mRNA, complete cds. 11/11 None
SNAP00000039274 ENSEMBL cdna:SNAP chromosome:CEL140:X:14924949:14928850:-1 11/11 None
GENEFINDER00000039280 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14924949:14928850:-1 11/11 None
F14F4.1 ENSEMBL cdna:known chromosome:CEL140:X:14924949:14928850:-1 gene:F14F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14924948-14928850(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl F14F4.1
Entrez Gene 184471 Entrez gene
SwissProt O62169 EMBL-EBI
WormBase CE17670 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.1454.1.S1_AT similar to arginine vasopressin receptor 1A cfa
CHICKEN:GGAAFFX.6155.1.S1_AT similar to arginine vasotocin receptor gga
HG-U133_PLUS_2:206250_X_AT arginine vasopressin receptor 1A hs
HG-U133A_2:206250_X_AT arginine vasopressin receptor 1A hs
HG-U133A:206250_X_AT arginine vasopressin receptor 1A hs
HG-U133_PLUS_2:206251_S_AT arginine vasopressin receptor 1A hs
HG-U133A:206251_S_AT arginine vasopressin receptor 1A hs
HG-FOCUS:206251_S_AT arginine vasopressin receptor 1A hs
HG-U133A_2:206251_S_AT arginine vasopressin receptor 1A hs
HG-U133_PLUS_2:206252_S_AT arginine vasopressin receptor 1A hs
HG-U133A:206252_S_AT arginine vasopressin receptor 1A hs
HG-U133A_2:206252_S_AT arginine vasopressin receptor 1A hs
HUGENEFL:U19906_AT arginine vasopressin receptor 1A hs
U133_X3P:G2623229_3P_A_AT arginine vasopressin receptor 1A hs
U133_X3P:G13112054_3P_A_AT arginine vasopressin receptor 1A hs
U133_X3P:HS.2131.0.S1_3P_A_AT arginine vasopressin receptor 1A hs
HG-U95AV2:38955_AT arginine vasopressin receptor 1A hs
MOE430A:1418604_AT arginine vasopressin receptor 1A mm
MOUSE430A_2:1418604_AT arginine vasopressin receptor 1A mm
MOUSE430_2:1418604_AT arginine vasopressin receptor 1A mm
MOUSE430_2:1418603_AT arginine vasopressin receptor 1A mm
MOE430A:1418603_AT arginine vasopressin receptor 1A mm
MOUSE430A_2:1418603_AT arginine vasopressin receptor 1A mm
MU11KSUBA:D49730_S_AT arginine vasopressin receptor 1A mm
MG-U74AV2:92532_AT arginine vasopressin receptor 1A mm
MG-U74AV2:161189_R_AT Arginine vasopressin receptor 1A, mRNA (cDNA clone MGC:13944 IMAGE:4220075) mm
RG-U34A:RC_AA892251_AT arginine vasopressin receptor 1A rn
RAE230A:1369664_AT arginine vasopressin receptor 1A rn
RAT230_2:1369664_AT arginine vasopressin receptor 1A rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16265 Hypothetical protein F14F4.1 [Caenorhabditis elegans] ref|NP_510477.1| F14F4.1 [Caenorhabditis elegans] 0.0
blast CAE63281 Hypothetical protein CBG07660 [Caenorhabditis briggsae] 1.0E-167
blast CAE63281 Hypothetical protein CBG07660 [Caenorhabditis briggsae] 1.0E-140
blast CAE64101 Hypothetical protein CBG08710 [Caenorhabditis briggsae] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.2E-43
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.7E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510477.1 7 20-42,61-83,103-121,142-164,189-211,271-293,303-325
F14F4.1 7 20-42,61-83,103-121,142-164,189-211,271-293,303-325
SNAP00000039274 6 21-46,61-83,103-125,149-171,231-253,263-285
GENEFINDER00000039280 6 21-46,61-83,103-125,149-171,231-253,263-285
Sequence
Target Sequence 
>C. ELEGANS:193347_AT
ttccctcaattcttgcagcagttttttattattgcgtttgcaaagccgtccgcctatctt
cgacaaaatcagttagagcaatggatagtcaaaaaaggaatggaaaatactcttctggag
caaccgaggactacatcgaagagctccgcaagaaatctaaaggcttccgtcagcaaatgt
cagagtttgatagaaaacgtgttcagacagtccgtttaacaatcacaattgttgcatgca
atttcttcctttggatgccgttctgccttattaatgttattcaagcattgtggcctgaga
tctcacatatcatgtttatcaattatgtcgctatacttggaaatctaaattcttgcctta
acccgtggatctacattttgttcaaccgatcacacgttcgcaaggcactttgtcgttcaa
gacgctcgttcacagaagttactaaaaaacgaagttttgaaaatttcgagtgttcctcaa
cagcaacaatgaacaataattataacaactgtcatgcttacaccgctttcagtaaccggt
ctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCTCAATTCTTGCAGCAGTTTT 120 699 608 Antisense
CGTCCGCCTATCTTCGACAAAATCA 358 245 654 Antisense
GCTTCCGTCAGCAAATGTCAGAGTT 565 305 770 Antisense
GCAATTTCTTCCTTTGGATGCCGTT 379 321 845 Antisense
TTGGATGCCGTTCTGCCTTATTAAT 136 705 858 Antisense
TTGCCTTAACCCGTGGATCTACATT 249 701 960 Antisense
TCAACCGATCACACGTTCGCAAGGC 395 631 989 Antisense
GTTCGCAAGGCACTTTGTCGTTCAA 203 443 1003 Antisense
TGTCGTTCAAGACGCTCGTTCACAG 40 559 1018 Antisense
TAACAACTGTCATGCTTACACCGCT 417 639 1110 Antisense
TACACCGCTTTCAGTAACCGGTCTC 379 643 1126 Antisense
Sequence Source Affymetrix Proprietary Database