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[193346_at] PDZ domain (Also known as DHR or GLGF).

Description C52A11.3 /REP_DB=WormBase Gene ID /WP=CE01529 /TR=SW:Q09284 /GB=CAA86765.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster 6grp_total > 09      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 44.5
(3)
A 		37.7
(1.9)
A 		7.5
(-3)
A 		10.3
(-2.5)
A 		37
B 22.6
(1.7)
A 		26.6
(3)
A 		7.7
(-3)
A 		25.5
(2.7)
A 		19
C 28
(-1.7)
A 		42.1
(3)
A 		24
(-3)
A 		41.9
(2.9)
A 		18
avr 31.7
(2) 		35.5
(3) 		13.1
(-3) 		25.9
(0.4) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 39.6
(3)
A 		7.9
(-2.6)
A 		10.9
(-2.1)
A 		31.9
(1.6)
A 		5.9
(-3)
A 		9.9
(-2.3)
A 		34
B 33.6
(1.3)
A 		28.1
(0.4)
A 		20
(-0.8)
A 		45
(3)
A 		5.7
(-3)
A 		24.5
(-0.1)
A 		39
C 36.6
(0.4)
A 		11.1
(-2.4)
A 		20.7
(-1.3)
A 		61
(3)
A 		21.2
(-1.3)
A 		5.1
(-3)
A 		56
avr 36.6
(1.4) 		15.7
(-2.2) 		17.2
(-1.9) 		46
(3) 		10.9
(-3) 		13.2
(-2.6) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.2
(3)
A 		8.2
(-0.3)
A 		2
(-2.8)
A 		1.5
(-3)
A 		15
B 7.2
(3)
A 		6.6
(2.3)
A 		1.8
(-3)
A 		5.4
(1)
A 		5
C 9.3
(-0.4)
A 		12.1
(3)
A 		8.4
(-1.4)
A 		7.1
(-3)
A 		5
avr 10.9
(3) 		9
(1.3) 		4.1
(-3) 		4.7
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.3
(2.2)
A 		2.8
(-2)
A 		2.4
(-2.4)
A 		8.1
(3)
A 		1.8
(-3)
A 		2.4
(-2.4)
A 		6
B 11.7
(2.9)
A 		9.3
(1.4)
A 		4.9
(-1.4)
A 		11.9
(3)
A 		2.3
(-3)
A 		9.1
(1.3)
A 		10
C 13.6
(3)
A 		3.4
(-2.1)
A 		5.3
(-1.2)
A 		12.3
(2.3)
A 		6.8
(-0.4)
A 		1.7
(-3)
A 		12
avr 10.9
(3) 		5.2
(-1.7) 		4.2
(-2.5) 		10.8
(2.9) 		3.6
(-3) 		4.4
(-2.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3827
Sequence Type Exemplar sequence
Representative Public ID C52A11.3 NCBI
Target Description C52A11.3 /REP_DB=WormBase Gene ID /WP=CE01529 /TR=SW:Q09284 /GB=CAA86765.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063914 NCBI Caenorhabditis elegans C52A11.3 (C52A11.3) mRNA, complete cds. 11/11 None
C52A11.3 ENSEMBL cdna:known chromosome:CEL140:II:10737190:10738076:1 gene:C52A11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035265 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035274 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10737186-10738073(+) 100.0 100.0
Public Domain and Genome References
Gene Title PDZ domain (Also known as DHR or GLGF).
Ensembl C52A11.3
Entrez Gene 183712 Entrez gene
SwissProt Q09284 EMBL-EBI
WormBase CE01529 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86765 Hypothetical protein C52A11.3 [Caenorhabditis elegans] ref|NP_496315.1| C52A11.3 [Caenorhabditis elegans] sp|Q09284|YQJ3_CAEEL Hypothetical protein C52A11.3 in chromosome II 8.0E-79
blast CAA86789 Hypothetical protein C52A11.4a [Caenorhabditis elegans] emb|CAA86769.3| Hypothetical protein C52A11.4a [Caenorhabditis elegans] ref|NP_001022038.1| Multiple PDZ domain protein family member (mpz-1) [Caenorhabditis elegans] 2.0E-30
blast CAE59602 Hypothetical protein CBG03010 [Caenorhabditis briggsae] 5.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 5.6E-9
Sequence
Target Sequence 
>C. ELEGANS:193346_AT
gtttgagccgggaagtttggaccataactttctacggattccagaacaatgcgacgaatc
acttgctgctttccgagcttatgaaacatatttaataatactacagataaaaattcaccg
aagacaaccacctagtccaccatcaactatcacattgagcagttatgagtacagttcact
cgctgtcggaatcatttccgatttgaaagaagagggttgtgatacattacttgtcaagct
tcagaaggatgccaatcggaaaatcggaatgggagtcggggtaagagatcgtggaatcct
cataaccactgtagtacctggatcggttgccgctgagaaattgaaagttggagatcgtat
tttggcggtcaatggacgtccaattttggatcagcgctcggtggtgaaatcggtcaaagc
atctggtcaacgactgtatcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGAGCCGGGAAGTTTGGACCAT 196 447 33 Antisense
TTGGACCATAACTTTCTACGGATTC 464 707 49 Antisense
AATGCGACGAATCACTTGCTGCTTT 159 167 80 Antisense
ACTTGCTGCTTTCCGAGCTTATGAA 178 105 93 Antisense
TCACCGAAGACAACCACCTAGTCCA 82 625 147 Antisense
AGTTCACTCGCTGTCGGAATCATTT 450 61 205 Antisense
GAATCCTCATAACCACTGTAGTACC 120 331 326 Antisense
TAGTACCTGGATCGGTTGCCGCTGA 185 651 344 Antisense
TGGAGATCGTATTTTGGCGGTCAAT 602 547 381 Antisense
GGATCAGCGCTCGGTGGTGAAATCG 366 511 420 Antisense
GCATCTGGTCAACGACTGTATCTTC 657 307 451 Antisense
Sequence Source Affymetrix Proprietary Database