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[193344_at] Drosophila chaoptin protein like

Description C44H4.3 /REP_DB=WormBase Gene ID /WP=CE08724 /GEN=sym-1 /TR=Q93374 /GB=CAB01865.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Drosophila chaoptin protein like
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      6grp_highest_nonorm > 02      6grp_total > 08      4grp_total > 49      6grp_cgc > 10      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3626
1 2 3 4 range
A 162.3
(-2.9)
P 		3690.6
(3)
P 		3074.8
(2)
P 		77.1
(-3)
A 		3614
B 157.1
(-2.8)
P 		3650.8
(3)
P 		3359.4
(2.5)
P 		64.4
(-3)
A 		3586
C 176.5
(-2.8)
P 		3440.3
(3)
P 		3448.9
(3)
P 		69.2
(-3)
A 		3380
avr 165.3
(-2.8) 		3593.9
(3) 		3294.4
(2.5) 		70.2
(-3) 		3524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4215
1 2 3 4 5 6 range
A 3833.8
(3)
P 		2510.1
(0.6)
P 		1683.6
(-0.9)
P 		2542.3
(0.6)
P 		1185.4
(-1.8)
P 		546.9
(-3)
P 		3287
B 4174
(3)
P 		2433.3
(0.1)
P 		1896.8
(-0.7)
P 		2427.7
(0.1)
P 		1075.5
(-2.1)
P 		514.1
(-3)
P 		3660
C 4689.9
(3)
P 		1922.3
(-0.9)
P 		2504.4
(-0.1)
P 		1866.6
(-1)
P 		1750.2
(-1.2)
P 		474.5
(-3)
P 		4215
avr 4232.6
(3) 		2288.6
(-0.1) 		2028.3
(-0.6) 		2278.9
(-0.2) 		1337
(-1.7) 		511.8
(-3) 		3721
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1191
1 2 3 4 range
A 59.1
(-2.6)
P 		801.1
(3)
P 		803.8
(3)
P 		11.3
(-3)
A 		793
B 50.1
(-2.8)
P 		901.7
(3)
P 		778.5
(2.2)
P 		13.7
(-3)
A 		888
C 58.4
(-2.8)
P 		989.1
(1.9)
P 		1202
(3)
P 		11.7
(-3)
A 		1190
avr 55.9
(-2.7) 		897.3
(2.8) 		928.1
(3) 		12.2
(-3) 		916

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1605
1 2 3 4 5 6 range
A 706.7
(1.5)
P 		892.7
(3)
P 		366.7
(-1.2)
P 		644.8
(1)
P 		357.7
(-1.2)
P 		133.2
(-3)
P 		760
B 1452.3
(3)
P 		810
(-0.1)
P 		460.6
(-1.7)
P 		643
(-0.9)
P 		437
(-1.8)
P 		191.7
(-3)
P 		1261
C 1738.3
(3)
P 		586.6
(-1.4)
P 		637.4
(-1.2)
P 		375.4
(-2.2)
P 		566.3
(-1.5)
P 		158.8
(-3)
P 		1580
avr 1299.1
(3) 		763.1
(0.2) 		488.2
(-1.3) 		554.4
(-0.9) 		453.7
(-1.5) 		161.2
(-3) 		1138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18015
Sequence Type Exemplar sequence
Representative Public ID C44H4.3 NCBI
Target Description C44H4.3 /REP_DB=WormBase Gene ID /WP=CE08724 /GEN=sym-1 /TR=Q93374 /GB=CAB01865.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Drosophila chaoptin protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078025 NCBI Caenorhabditis elegans SYnthetic lethal with Mec family member (sym-1) (sym-1) mRNA, complete cds. 11/11 None
SNAP00000043717 ENSEMBL cdna:SNAP chromosome:CEL140:X:14581720:14584081:1 11/11 None
GENEFINDER00000043724 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14581720:14584081:1 11/11 None
C44H4.3 ENSEMBL cdna:known chromosome:CEL140:X:14581575:14584289:1 gene:C44H4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14581719-14584081(+) 97.26 100.0
Public Domain and Genome References
Gene Title Drosophila chaoptin protein like
Gene Symbol sym-1
Ensembl C44H4.3
Entrez Gene 181555 Entrez gene
SwissProt Q93374 EMBL-EBI
WormBase CE08724 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1631311_AT dm
DROSGENOME1:145589_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB01865 Hypothetical protein C44H4.3 [Caenorhabditis elegans] ref|NP_510426.1| SYnthetic lethal with Mec family member (sym-1) [Caenorhabditis elegans] emb|CAB43345.1| SYM-1 protein [Caenorhabditis elegans] 0.0
blast CAE63201 Hypothetical protein CBG07556 [Caenorhabditis briggsae] 0.0
blast CAE63200 Hypothetical protein CBG07555 [Caenorhabditis briggsae] 9.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0023
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.38
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.34
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.028
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.073
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0064
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 8.9E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.028
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.013
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.061
Sequence
Target Sequence 
>C. ELEGANS:193344_AT
gaagacaaaggctaccacaactacagaggaaccagaagatgacgaggatgtttatgttga
tgatgatgaggagggtaccgaggaagaagaagaagaagtttctaccactgaaaaatctac
caccaccaccactaccacaaccgaggcttccaagtctaagaaggttaacatggagagatt
ctggagactttccaacaagccaagcggcaaatctccattcctgagacactcccagggaaa
taagccaagataccttcagacgactaccgaggctccagaagaggaagatgaagccgagta
catttctgatgatggaggcgccgaggaatctgaggaggctgagacaactgttgctaccac
aacaaccacagaaccatcagtaaaggttccagccagaatcagggaacgccagagaatgtt
cgccagcaacattccatggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACAAAGGCTACCACAACTACA 606 339 1518 Antisense
ACAACCGAGGCTTCCAAGTCTAAGA 566 113 1654 Antisense
GATTCTGGAGACTTTCCAACAAGCC 190 431 1694 Antisense
CAAGCCAAGCGGCAAATCTCCATTC 128 187 1713 Antisense
TCCATTCCTGAGACACTCCCAGGGA 319 591 1731 Antisense
GATACCTTCAGACGACTACCGAGGC 79 423 1766 Antisense
GAAGCCGAGTACATTTCTGATGATG 50 345 1807 Antisense
GGAGGCGCCGAGGAATCTGAGGAGG 192 515 1831 Antisense
CCACAACAACCACAGAACCATCAGT 651 275 1874 Antisense
GGAACGCCAGAGAATGTTCGCCAGC 63 531 1920 Antisense
GTTCGCCAGCAACATTCCATGGATG 702 441 1935 Antisense
Sequence Source Affymetrix Proprietary Database