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[193343_at] Drosophila sex-regulated protein janus like

Description F36A2.8 /REP_DB=WormBase Gene ID /WP=CE09947 /TR=P90861 /GB=CAB03070.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila sex-regulated protein janus like
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 06      4grp_high_8_8 > 29      6grp_highest_nonorm > 82      6grp_total > 76      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 286.7
(-3)
P 		356.4
(3)
P 		294
(-2.4)
P 		350.4
(2.5)
P 		70
B 335
(-3)
P 		353.3
(-2)
P 		356.1
(-1.9)
P 		446.1
(3)
P 		111
C 256.2
(-3)
P 		384.1
(0.7)
P 		347.8
(-0.3)
P 		461.5
(3)
P 		205
avr 292.6
(-3) 		364.6
(0.4) 		332.6
(-1.1) 		419.3
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 276.7
(-3)
P 		314.7
(-2.3)
P 		584.6
(3)
P 		424.6
(-0.1)
P 		383.6
(-0.9)
P 		359.1
(-1.4)
P 		308
B 404.9
(-1.1)
P 		365.5
(-2.2)
P 		441.3
(-0)
P 		338.2
(-3)
P 		477.4
(1)
P 		544.5
(3)
P 		206
C 384.6
(-1.8)
P 		381.5
(-1.9)
P 		335.8
(-3)
P 		362.7
(-2.4)
P 		412.3
(-1.2)
P 		585.8
(3)
P 		250
avr 355.4
(-2.9) 		353.9
(-3) 		453.9
(1.2) 		375.2
(-2.1) 		424.4
(-0) 		496.5
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 104.4
(3)
P 		77.4
(-0.1)
P 		76.8
(-0.1)
P 		51.3
(-3)
P 		53
B 106.8
(3)
P 		87.3
(-1.8)
P 		82.5
(-3)
P 		95.1
(0.1)
P 		24
C 84.8
(-2)
P 		110.4
(1.5)
P 		121.2
(3)
P 		77.8
(-3)
P 		43
avr 98.7
(3) 		91.7
(1.3) 		93.5
(1.7) 		74.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 51
(-3)
P 		111.9
(1.8)
P 		127.3
(3)
P 		107.7
(1.5)
P 		115.7
(2.1)
P 		87.4
(-0.1)
P 		76
B 140.9
(-0.3)
P 		121.7
(-1.3)
P 		107.2
(-2.1)
P 		89.6
(-3)
P 		193.9
(2.5)
P 		203
(3)
P 		113
C 142.6
(0.4)
P 		116.4
(-0.9)
P 		85.5
(-2.4)
P 		72.9
(-3)
P 		133.4
(-0.1)
P 		196.1
(3)
P 		123
avr 111.5
(-1.2) 		116.7
(-0.8) 		106.7
(-1.6) 		90.1
(-3) 		147.7
(1.8) 		162.2
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2070
Sequence Type Exemplar sequence
Representative Public ID F36A2.8 NCBI
Target Description F36A2.8 /REP_DB=WormBase Gene ID /WP=CE09947 /TR=P90861 /GB=CAB03070.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila sex-regulated protein janus like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059981(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059981 NCBI Caenorhabditis elegans F36A2.8 (F36A2.8) mRNA, complete cds. 9/11 None
GENEFINDER00000004932 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8821006:8821352:1 9/11 None
F36A2.8 ENSEMBL cdna:known chromosome:CEL140:I:8816900:8821375:1 gene:F36A2.8 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004921 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8820765-8821283(+) 100.0 100.0
Public Domain and Genome References
Gene Title Drosophila sex-regulated protein janus like
Ensembl F36A2.8
Entrez Gene 185336 Entrez gene
SwissProt P90861 EMBL-EBI
WormBase CE32406 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16763.1.S1_AT similar to 14 kDa phosphohistidine phosphatase (Phosphohistidine phosphatase 1) cfa
CANINE_2:CFA.16763.1.S1_S_AT similar to 14 kDa phosphohistidine phosphatase (Phosphohistidine phosphatase 1) cfa
DROSOPHILA_2:1623271_A_AT janus A dm
DROSGENOME1:143205_AT janus A dm
CHICKEN:GGA.9876.1.S1_AT phosphohistidine phosphatase 1 gga
CHICKEN:GGA.9876.2.S1_A_AT phosphohistidine phosphatase 1 gga
HU35KSUBA:RC_AA609462_AT phosphohistidine phosphatase 1 hs
HU35KSUBD:RC_W42627_F_AT phosphohistidine phosphatase 1 hs
HU35KSUBD:RC_R45994_F_AT phosphohistidine phosphatase 1 hs
HG-U133B:223207_X_AT phosphohistidine phosphatase 1 hs
HG-U133_PLUS_2:223207_X_AT phosphohistidine phosphatase 1 hs
HG-U133_PLUS_2:225683_X_AT phosphohistidine phosphatase 1 hs
HG-U133B:225683_X_AT phosphohistidine phosphatase 1 hs
U133_X3P:G9858828_3P_S_AT phosphohistidine phosphatase 1 hs
HG-U95B:57061_AT phosphohistidine phosphatase 1 hs
HG-U133_PLUS_2:236744_AT Phosphohistidine phosphatase 1 hs
HG-U133B:236744_AT Phosphohistidine phosphatase 1 hs
HG-U95E:79750_R_AT Phosphohistidine phosphatase 1 hs
U133_X3P:236744_3P_AT Phosphohistidine phosphatase 1 hs
U133_X3P:HS.199711.0.A1_3P_AT Phosphohistidine phosphatase 1 hs
MG-U74AV2:160123_AT phosphohistidine phosphatase 1 mm
MU11KSUBB:MSA.4498.0_S_AT phosphohistidine phosphatase 1 mm
MOE430A:1427903_AT phosphohistidine phosphatase 1 mm
MOUSE430A_2:1427903_AT phosphohistidine phosphatase 1 mm
MOUSE430_2:1427903_AT phosphohistidine phosphatase 1 mm
MU19KSUBB:TC29887_AT Phosphohistidine phosphatase 1, mRNA (cDNA clone MGC:41579 IMAGE:1246740) mm
MU19KSUBB:TC33896_AT Phosphohistidine phosphatase 1, mRNA (cDNA clone MGC:41579 IMAGE:1246740) mm
RG-U34B:RC_AA899959_G_AT phosphohistidine phosphatase 1 (predicted) rn
RG-U34B:RC_AA899959_AT phosphohistidine phosphatase 1 (predicted) rn
RG-U34C:RC_AI102252_AT phosphohistidine phosphatase 1 (predicted) rn
RAE230A:1398997_AT phosphohistidine phosphatase 1 (predicted) rn
RAT230_2:1398997_AT phosphohistidine phosphatase 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB03070 Hypothetical protein F36A2.8 [Caenorhabditis elegans] ref|NP_492382.2| F36A2.8 [Caenorhabditis elegans] 7.0E-64
blast CAB03070 Hypothetical protein F36A2.8 [Caenorhabditis elegans] ref|NP_492382.2| F36A2.8 [Caenorhabditis elegans] 3.0E-50
blast CAE66978 Hypothetical protein CBG12374 [Caenorhabditis briggsae] 5.0E-41
blast CAE66978 Hypothetical protein CBG12374 [Caenorhabditis briggsae] 7.0E-41
blast XP_783577 PREDICTED: similar to 14 kDa phosphohistidine phosphatase (Phosphohistidine phosphatase 1) [Strongylocentrotus purpuratus] 2.0E-25
blast XP_783577 PREDICTED: similar to 14 kDa phosphohistidine phosphatase (Phosphohistidine phosphatase 1) [Strongylocentrotus purpuratus] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR007702 EMBL-EBI Janus/Ocnus 1.3E-32
Pfam IPR007702 EMBL-EBI Janus/Ocnus 2.2E-21
Sequence
Target Sequence 
>C. ELEGANS:193343_AT
gaacatgcacacttttattcctctttgaggccgctagtttctaaaaaagaagagggaaaa
tccgtaaccgacaattcaacaaagcagcagaaatttgtagtccgcggatattatagatgc
agctttcatgacgatattcttcaggagacgaagagttctgcaccatctgacttaaagctg
aaatgtgtgggcggtggtcgaatcaagcacgatgaaattggaaaagatattcttgtgtat
ggatattcgtatggctatggacgagctgatcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATGCACACTTTTATTCCTCTT 294 351 16 Antisense
CCTCTTTGAGGCCGCTAGTTTCTAA 12 267 35 Antisense
ACCGACAATTCAACAAAGCAGCAGA 430 89 82 Antisense
GCAGCAGAAATTTGTAGTCCGCGGA 126 313 99 Antisense
GTCCGCGGATATTATAGATGCAGCT 35 477 115 Antisense
TGCAGCTTTCATGACGATATTCTTC 511 577 133 Antisense
GGAGACGAAGAGTTCTGCACCATCT 61 519 159 Antisense
GTTCTGCACCATCTGACTTAAAGCT 65 443 170 Antisense
AAGCTGAAATGTGTGGGCGGTGGTC 310 149 190 Antisense
GGGCGGTGGTCGAATCAAGCACGAT 288 491 204 Antisense
ATGGCTATGGACGAGCTGATCATCA 305 53 266 Antisense
Sequence Source Affymetrix Proprietary Database