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[193336_at] 7 transmembrane receptor (rhodopsin family)

Description T14C1.1 /REP_DB=WormBase Gene ID /WP=CE23984 /TR=Q22485 /GB=CAA94616.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 482
(3)
P 		194
(-1.7)
P 		135.7
(-2.7)
P 		114.6
(-3)
P 		367
B 410.4
(3)
P 		155.9
(-2.2)
A 		116.4
(-3)
A 		152.4
(-2.3)
P 		294
C 439.4
(3)
P 		156.6
(-2.6)
A 		138.2
(-3)
M 		157.3
(-2.6)
P 		301
avr 443.9
(3) 		168.8
(-2.3) 		130.1
(-3) 		141.4
(-2.8) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 338.8
(3)
P 		218.6
(0.1)
P 		194.7
(-0.5)
P 		161
(-1.3)
P 		155.2
(-1.5)
P 		92.3
(-3)
P 		247
B 399.7
(3)
P 		316.6
(1.1)
P 		210.1
(-1.3)
P 		162.5
(-2.4)
P 		158.3
(-2.5)
P 		134.5
(-3)
P 		265
C 341.1
(3)
P 		298
(2)
P 		211.4
(-0)
P 		235.5
(0.5)
P 		138.4
(-1.7)
P 		84.9
(-3)
P 		256
avr 359.9
(3) 		277.7
(1.1) 		205.4
(-0.6) 		186.3
(-1.1) 		150.6
(-1.9) 		103.9
(-3) 		256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 175.5
(3)
P 		42.1
(-2)
P 		35.5
(-2.3)
P 		16.8
(-3)
P 		159
B 130.9
(3)
P 		38.5
(-2.3)
A 		27
(-3)
A 		32.5
(-2.7)
P 		104
C 145.4
(3)
P 		45
(-2.1)
A 		48.2
(-1.9)
M 		26.5
(-3)
P 		119
avr 150.6
(3) 		41.9
(-2.2) 		36.9
(-2.4) 		25.3
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 62.5
(1.3)
P 		77.8
(3)
P 		42.4
(-0.8)
P 		40.8
(-1)
P 		46.8
(-0.4)
P 		22.5
(-3)
P 		55
B 139.1
(3)
P 		105.4
(0.9)
P 		51
(-2.5)
P 		43
(-3)
P 		64.3
(-1.7)
P 		50.2
(-2.6)
P 		96
C 126.4
(3)
P 		90.9
(0.8)
P 		53.8
(-1.4)
P 		47.4
(-1.8)
P 		44.8
(-2)
P 		28.4
(-3)
P 		98
avr 109.3
(3) 		91.4
(1.6) 		49.1
(-1.8) 		43.7
(-2.2) 		52
(-1.5) 		33.7
(-3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18019
Sequence Type Exemplar sequence
Representative Public ID T14C1.1 NCBI
Target Description T14C1.1 /REP_DB=WormBase Gene ID /WP=CE23984 /TR=Q22485 /GB=CAA94616.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077999(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077999 NCBI Caenorhabditis elegans T14C1.1 (T14C1.1) mRNA, complete cds. 9/11 None
GENEFINDER00000029575 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14406096:14409368:1 11/11 None
T14C1.1 ENSEMBL cdna:known chromosome:CEL140:X:14406096:14411100:1 gene:T14C1.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029572 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14406095-14409368(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Ensembl T14C1.1
Entrez Gene 181541 Entrez gene
SwissProt Q22485 EMBL-EBI
WormBase CE34212 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94616 Hypothetical protein T14C1.1 [Caenorhabditis elegans] ref|NP_510400.2| T14C1.1 [Caenorhabditis elegans] 0.0
blast CAE65619 Hypothetical protein CBG10659 [Caenorhabditis briggsae] 0.0
blast AAB66150 Hypothetical protein K07E8.5 [Caenorhabditis elegans] ref|NP_493779.2| K07E8.5 [Caenorhabditis elegans] 1.0E-42
blast AAB66150 Hypothetical protein K07E8.5 [Caenorhabditis elegans] ref|NP_493779.2| K07E8.5 [Caenorhabditis elegans] 2.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510400.2 7 71-93,106-128,148-170,191-213,254-276,289-311,321-343
T14C1.1 7 71-93,106-128,148-170,191-213,254-276,289-311,321-343
GENEFINDER00000029575 7 71-93,106-128,148-170,191-213,249-271,306-328,338-360
Sequence
Target Sequence 
>C. ELEGANS:193336_AT
gtgtgtccagctactttgagatataatgaaatgtatcagtcaatatattataaatatatg
tatgcaatttttcttgccgtcggtcctttgttcacattgattattctcaacacattgatt
attggtaagtattcaattttcccccaggtcgctgaaaataaattgacactagcaagtttc
tcagtgttcgggtcaagtgcctctaatatggatgatactatgtcattaattcttgttgtt
ctgctattcatttgctgcaacacaattgccttggtcataaatatatttgaaagttatcta
tcggagacgctgggcagcaaaattaactacatagtggatttgtcaaactttttagtggtt
tttaattcgagttttaacataatcatctacatcaaatactcccggccatttgctgacact
cttttctcctacttttgtaaccgaaaaccaataaccgacaatgatggacccggaccaccg
atgttgatcacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGTCCAGCTACTTTGAGATATA 528 487 703 Antisense
GTATGCAATTTTTCTTGCCGTCGGT 282 455 762 Antisense
GTCGGTCCTTTGTTCACATTGATTA 563 471 781 Antisense
TGGTAAGTATTCAATTTTCCCCCAG 585 551 825 Antisense
CTAGCAAGTTTCTCAGTGTTCGGGT 635 221 871 Antisense
GTGTTCGGGTCAAGTGCCTCTAATA 626 451 886 Antisense
GTCATTAATTCTTGTTGTTCTGCTA 459 467 924 Antisense
TGTTCTGCTATTCATTTGCTGCAAC 282 563 939 Antisense
GCTGCAACACAATTGCCTTGGTCAT 16 297 956 Antisense
ATCTATCGGAGACGCTGGGCAGCAA 700 31 998 Antisense
CCGGACCACCGATGTTGATCACAGA 86 265 1172 Antisense
Sequence Source Affymetrix Proprietary Database