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[193335_at] 7 transmembrane receptor (rhodopsin family)

Description T06E6.3 /REP_DB=WormBase Gene ID /WP=CE13317 /TR=O45758 /GB=CAB03313.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 09      4grp_total > 44      6grp_cgc > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 37.1
(0)
M 		71.2
(3)
A 		7.6
(-2.5)
A 		1.9
(-3)
A 		69
B 47
(3)
A 		46.1
(2.9)
A 		10.3
(-3)
A 		40.7
(2)
A 		37
C 66.6
(2.2)
A 		74.1
(3)
A 		45.2
(0)
A 		15.8
(-3)
A 		58
avr 50.2
(1.2) 		63.8
(3) 		21
(-2.8) 		19.5
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 55.7
(3)
A 		54.5
(2.8)
A 		42.6
(1.3)
A 		38.6
(0.8)
A 		36.1
(0.5)
A 		9.1
(-3)
A 		47
B 115.1
(3)
A 		40.6
(-2.4)
M 		80.5
(0.5)
A 		106.5
(2.4)
P 		60.6
(-0.9)
A 		32
(-3)
A 		83
C 71.9
(1.2)
P 		74.2
(1.4)
M 		25.2
(-3)
A 		91.9
(3)
A 		31.3
(-2.4)
A 		25.1
(-3)
A 		67
avr 80.9
(3) 		56.4
(0.5) 		49.4
(-0.2) 		79
(2.8) 		42.7
(-0.9) 		22.1
(-3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 13.5
(2.2)
M 		15.5
(3)
A 		2
(-2.3)
A 		0.3
(-3)
A 		15
B 15
(3)
A 		11.4
(1.3)
A 		2.4
(-3)
A 		8.7
(-0)
A 		13
C 22.1
(3)
A 		21.3
(2.8)
A 		15.8
(1.1)
A 		2.7
(-3)
A 		19
avr 16.9
(3) 		16.1
(2.6) 		6.7
(-1.7) 		3.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 10.3
(-0.2)
A 		19.4
(3)
A 		9.3
(-0.5)
A 		9.8
(-0.3)
A 		10.9
(0)
A 		2.2
(-3)
A 		17
B 40
(3)
A 		13.5
(-2.7)
M 		19.6
(-1.4)
A 		28.2
(0.5)
P 		24.6
(-0.3)
A 		11.9
(-3)
A 		28
C 26.6
(3)
P 		22.6
(1.8)
M 		6.4
(-3)
A 		18.5
(0.6)
A 		10.1
(-1.9)
A 		8.4
(-2.4)
A 		20
avr 25.6
(3) 		18.5
(0.6) 		11.8
(-1.6) 		18.8
(0.7) 		15.2
(-0.4) 		7.5
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14602
Sequence Type Exemplar sequence
Representative Public ID T06E6.3 NCBI
Target Description T06E6.3 /REP_DB=WormBase Gene ID /WP=CE13317 /TR=O45758 /GB=CAB03313.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074426 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-40) (srx-40) mRNA, complete cds. 11/11 None
T06E6.3 ENSEMBL cdna:known chromosome:CEL140:V:15399971:15402377:-1 gene:T06E6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15399970-15402377(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Gene Symbol srx-40
Ensembl T06E6.3
Entrez Gene 188182 Entrez gene
SwissProt O45758 EMBL-EBI
WormBase CE13317 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03313 Hypothetical protein T06E6.3 [Caenorhabditis elegans] ref|NP_506827.1| Serpentine Receptor, class X family member (srx-40) [Caenorhabditis elegans] 0.0
blast AAB66002 Serpentine receptor, class x protein 38 [Caenorhabditis elegans] ref|NP_504380.2| Serpentine Receptor, class X family member (srx-38) [Caenorhabditis elegans] 1.0E-111
blast CAE64083 Hypothetical protein CBG08688 [Caenorhabditis briggsae] 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-35
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.0E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506827.1 5 354-373,385-407,435-457,477-494,504-526
T06E6.3 5 354-373,385-407,435-457,477-494,504-526
Sequence
Target Sequence 
>C. ELEGANS:193335_AT
gatttctatccgtattcacaccaatattttacaatcaaatgttcaatataaaattcacca
aatacattgtcatgggaatatatttattatcctttggcctaataactctgttcttccaaa
ttttaggatgccaaaattattataatgctaaatatctagcatttcaatattccggtggaa
aaatttgccgttggtatgggacatatggagatttttatcaagttttcacactaacaatca
ctagtgcatttttgaatttttctgccatttggaaggtggcaaaattgaggacgaagtcgg
ttaaaaattcgattgagctgaactggctgaagcagtccttgagccaaactttgtttgtac
taataattgtttgctgtttcacatggggacctcgactgctgcctgacaaaaaattcacat
tcatattttcttcaattctatgggcagcagttcattgcttcgatggaataataaccctcg
ttttcaactctgaaatttggcgtaaaatcttttctacaggctccgcagttatcgttgtca
gcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCTATCCGTATTCACACCAAT 42 429 1103 Antisense
ATCCTTTGGCCTAATAACTCTGTTC 395 39 1191 Antisense
TAACTCTGTTCTTCCAAATTTTAGG 679 629 1205 Antisense
GAGCTGAACTGGCTGAAGCAGTCCT 351 387 1417 Antisense
GAAGCAGTCCTTGAGCCAAACTTTG 59 341 1431 Antisense
CCTCGACTGCTGCCTGACAAAAAAT 323 267 1492 Antisense
ATTTTCTTCAATTCTATGGGCAGCA 344 15 1527 Antisense
GGGCAGCAGTTCATTGCTTCGATGG 417 493 1544 Antisense
TAATAACCCTCGTTTTCAACTCTGA 371 633 1571 Antisense
GTAAAATCTTTTCTACAGGCTCCGC 498 455 1604 Antisense
GCTCCGCAGTTATCGTTGTCAGCAC 457 299 1622 Antisense
Sequence Source Affymetrix Proprietary Database