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[193334_s_at] clathrin coat assembly protein

Description K11D2.3 /REP_DB=WormBase Gene ID /WP=CE28050 /GEN=unc-101 /TR=O02282 /GB=CAB05557.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=clathrin coat assembly protein
Cluster 6grp_total > 18      4grp_total > 30      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 91.4
(3)
A 		19.9
(-2.9)
A 		18.5
(-3)
A 		75.6
(1.7)
A 		73
B 76.7
(2.7)
A 		79.9
(3)
A 		16.1
(-3)
A 		32.5
(-1.5)
A 		64
C 81.6
(3)
A 		35.4
(-1.2)
A 		15.7
(-3)
A 		76.5
(2.5)
A 		66
avr 83.2
(3) 		45.1
(-0.4) 		16.8
(-3) 		61.5
(1) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 125.8
(3)
A 		6.3
(-3)
A 		13.1
(-2.7)
A 		7.7
(-2.9)
A 		6.9
(-3)
A 		39.8
(-1.3)
A 		120
B 88.2
(3)
A 		53.5
(0.5)
A 		22.6
(-1.8)
A 		15.6
(-2.3)
A 		6.1
(-3)
A 		25.2
(-1.6)
A 		82
C 118.9
(3)
A 		10.5
(-2.7)
A 		51.8
(-0.6)
A 		12
(-2.7)
A 		5.5
(-3)
A 		22.9
(-2.1)
A 		113
avr 111
(3) 		23.4
(-2) 		29.2
(-1.7) 		11.8
(-2.7) 		6.2
(-3) 		29.3
(-1.7) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 33.3
(3)
A 		4.3
(-3)
A 		4.8
(-2.9)
A 		11.1
(-1.6)
A 		29
B 24.5
(3)
A 		19.7
(1.6)
A 		3.7
(-3)
A 		6.9
(-2.1)
A 		21
C 27
(3)
A 		10.2
(-1.7)
A 		5.5
(-3)
A 		12.9
(-0.9)
A 		22
avr 28.3
(3) 		11.4
(-1.3) 		4.7
(-3) 		10.3
(-1.6) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 23.2
(3)
A 		2.2
(-2.9)
A 		2.9
(-2.7)
A 		2
(-3)
A 		2.1
(-3)
A 		9.7
(-0.8)
A 		21
B 30.7
(3)
A 		17.8
(0.3)
A 		5.5
(-2.4)
A 		4.1
(-2.7)
A 		2.5
(-3)
A 		9.4
(-1.5)
A 		28
C 44.1
(3)
A 		3.2
(-2.8)
A 		13.2
(-1.4)
A 		2.4
(-2.9)
A 		1.8
(-3)
A 		7.7
(-2.2)
A 		42
avr 32.7
(3) 		7.7
(-1.9) 		7.2
(-2) 		2.8
(-2.9) 		2.1
(-3) 		8.9
(-1.7) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193334_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2309
Sequence Type Exemplar sequence
Representative Public ID K11D2.3 NCBI
Target Description K11D2.3 /REP_DB=WormBase Gene ID /WP=CE28050 /GEN=unc-101 /TR=O02282 /GB=CAB05557.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=clathrin coat assembly protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060773(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060773 NCBI Caenorhabditis elegans UNCoordinated family member (unc-101) (unc-101) mRNA, complete cds. 11/11 A 
GENEFINDER00000019743 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12516676:12521022:1 11/11 None
SNAP00000019737 ENSEMBL cdna:SNAP chromosome:CEL140:I:12516691:12527402:1 9/11 None
K11D2.3.1 ENSEMBL cdna:known chromosome:CEL140:I:12516570:12521526:1 gene:K11D2.3 11/11 None
K11D2.3.2 ENSEMBL cdna:known chromosome:CEL140:I:12516609:12521022:1 gene:K11D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12516606-12520953(+) 100.0 100.0
Public Domain and Genome References
Gene Title clathrin coat assembly protein
Gene Symbol unc-101
Ensembl K11D2.3
Entrez Gene 173121 Entrez gene
SwissProt P35602 EMBL-EBI
WormBase CE28050 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264914_AT clathrin adaptor complexes medium subunit family protein at
ATGENOME1:18859_AT clathrin adaptor complexes medium subunit family protein at
CANINE:1599631_AT similar to adaptor-related protein complex 1, mu 1 subunit cfa
CANINE:1587971_AT similar to adaptor-related protein complex 1, mu 1 subunit cfa
CANINE:1583651_AT similar to adaptor-related protein complex 1, mu 1 subunit cfa
CANINE_2:CFA.5143.1.S1_AT similar to adaptor-related protein complex 1, mu 1 subunit cfa
CANINE_2:CFA.5143.2.S1_S_AT similar to adaptor-related protein complex 1, mu 1 subunit cfa
CANINE_2:CFA.8508.1.A1_AT similar to adaptor-related protein complex 1, mu 1 subunit cfa
CANINE_2:CFAAFFX.24161.1.S1_S_AT similar to adaptor-related protein complex 1, mu 1 subunit cfa
DROSOPHILA_2:1623631_AT dm
DROSGENOME1:154572_AT dm
CHICKEN:GGA.5420.1.S1_AT adaptor-related protein complex 1, mu 1 subunit gga
CHICKEN:GGA.9794.1.S1_AT adaptor-related protein complex 1, mu 1 subunit gga
CHICKEN:GGAAFFX.11520.1.S1_S_AT adaptor-related protein complex 1, mu 1 subunit gga
HG-U133B:223025_S_AT adaptor-related protein complex 1, mu 1 subunit hs
HG-U133_PLUS_2:223025_S_AT adaptor-related protein complex 1, mu 1 subunit hs
HU35KSUBA:AA032048_AT adaptor-related protein complex 1, mu 1 subunit hs
HU35KSUBA:RC_AA226922_AT adaptor-related protein complex 1, mu 1 subunit hs
U133_X3P:G13491973_3P_A_AT adaptor-related protein complex 1, mu 1 subunit hs
HG-U133_PLUS_2:223024_AT adaptor-related protein complex 1, mu 1 subunit hs
HG-U133B:223024_AT adaptor-related protein complex 1, mu 1 subunit hs
HG-U95B:45767_AT adaptor-related protein complex 1, mu 1 subunit hs
MU11KSUBA:M62419_S_AT adaptor-related protein complex AP-1, mu subunit 1 mm
MU11KSUBB:MSA.24398.0_I_AT adaptor-related protein complex AP-1, mu subunit 1 mm
MU11KSUBB:MSA.24398.0_F_AT adaptor-related protein complex AP-1, mu subunit 1 mm
MG-U74AV2:94248_AT adaptor-related protein complex AP-1, mu subunit 1 mm
MG-U74AV2:161439_F_AT adaptor-related protein complex AP-1, mu subunit 1 mm
MOE430A:1416307_AT adaptor-related protein complex AP-1, mu subunit 1 mm
MOUSE430A_2:1416307_AT adaptor-related protein complex AP-1, mu subunit 1 mm
MOUSE430_2:1416307_AT adaptor-related protein complex AP-1, mu subunit 1 mm
MOE430B:1459832_S_AT adaptor-related protein complex AP-1, mu subunit 1 mm
MOUSE430_2:1459832_S_AT adaptor-related protein complex AP-1, mu subunit 1 mm
RG-U34B:RC_AA901265_S_AT adaptor-related protein complex AP-1, mu subunit 1 (predicted) rn
RG-U34B:RC_AI011613_AT adaptor-related protein complex AP-1, mu subunit 1 (predicted) rn
RG-U34C:RC_AI237092_AT adaptor-related protein complex AP-1, mu subunit 1 (predicted) rn
RAE230A:1372045_AT adaptor-related protein complex AP-1, mu subunit 1 (predicted) rn
RAT230_2:1372045_AT adaptor-related protein complex AP-1, mu subunit 1 (predicted) rn
YEAST_2:1770280_AT Mu1-like medium subunit of the clathrin-associated protein complex (AP-1); binds clathrin; involved in clathrin-dependent Golgi protein sorting Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30125 clathrin vesicle coat inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05557 Hypothetical protein K11D2.3 [Caenorhabditis elegans] ref|NP_493174.1| UNCoordinated family member (unc-101) [Caenorhabditis elegans] sp|P35602|AP47_CAEEL Clathrin coat assembly protein AP47 (Clathrin coat-associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoordinated protein 101) 0.0
blast AAA72418 [Caenorhabditis elegans (unc-101) mRNA, complete cds.], gene product 0.0
blast CAE64115 Hypothetical protein CBG08724 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Pfam IPR001392 EMBL-EBI Clathrin adaptor complex, medium chain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193334_S_AT
aacaaccgtggtgaagccgctgatctggatcgagacaagcatcgaacgtcacagtcacag
ccgtgtctcgtttataatcaaagcgaaatcacaattcaaacggcgctccactgctaataa
cgtggaaatcattattccagtcccgtcggacgctgattcaccgaaattcaagacaagcat
cggttcggtgaagtatacgcccgagcaatcggccttcgtatggactattaagaattttcc
cggcggaaaagagtaccttttgaccgcccatctatctctaccgtctgtgatgagtgaaga
gtctgaaggacggccgccgattaaagtcaaatttgaaattccgtattttacgaccagcgg
cattcaggtccgttatctgaaaatcatcgagaaaagtggatatcaagcattgccgtgggt
ccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAACCGTGGTGAAGCCGCTGATC 351 131 840 Antisense
TCACAGCCGTGTCTCGTTTATAATC 538 627 894 Antisense
GAAATCACAATTCAAACGGCGCTCC 547 361 924 Antisense
CGGCGCTCCACTGCTAATAACGTGG 349 241 940 Antisense
GGAAATCATTATTCCAGTCCCGTCG 391 527 963 Antisense
GGTGAAGTATACGCCCGAGCAATCG 228 495 1026 Antisense
AGCAATCGGCCTTCGTATGGACTAT 189 77 1043 Antisense
CCATCTATCTCTACCGTCTGTGATG 439 271 1107 Antisense
TGAAGAGTCTGAAGGACGGCCGCCG 502 573 1134 Antisense
TACGACCAGCGGCATTCAGGTCCGT 392 647 1188 Antisense
GATATCAAGCATTGCCGTGGGTCCG 532 425 1238 Antisense
Sequence Source Affymetrix Proprietary Database