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[193331_at] 7 transmembrane receptor (rhodopsin family)

Description M01B2.9 /REP_DB=WormBase Gene ID /WP=CE16270 /TR=O17960 /GB=CAB05564.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 02      4grp_total > 22      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 23.1
(1.4)
A 		3.8
(-3)
A 		4.2
(-2.9)
A 		30.4
(3)
A 		27
B 31.3
(3)
P 		15.9
(-0)
A 		0.8
(-3)
A 		4.9
(-2.2)
A 		31
C 18.7
(-1.2)
A 		7.5
(-3)
A 		12.2
(-2.3)
A 		45.7
(3)
A 		38
avr 24.4
(2.3) 		9.1
(-2) 		5.7
(-3) 		27
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 35.6
(1.3)
A 		8.6
(-2)
A 		20.9
(-0.5)
A 		2.6
(-2.8)
A 		48.8
(3)
P 		1
(-3)
A 		48
B 24
(1.5)
A 		31.2
(3)
A 		5.1
(-2.6)
A 		30
(2.7)
A 		24.9
(1.7)
A 		3.1
(-3)
A 		28
C 1.6
(-2.9)
A 		36.6
(3)
P 		18.9
(0)
A 		1.2
(-3)
A 		6.8
(-2.1)
A 		8.6
(-1.7)
A 		35
avr 20.4
(1.3) 		25.5
(2.7) 		15
(-0.1) 		11.3
(-1.1) 		26.8
(3) 		4.2
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.4
(3)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		4.5
(-0.1)
A 		8
B 10
(3)
P 		3.9
(-0.7)
A 		0.2
(-3)
A 		1
(-2.5)
A 		10
C 6.2
(1.4)
A 		2.2
(-3)
A 		4.2
(-0.8)
A 		7.7
(3)
A 		6
avr 8.2
(3) 		2.3
(-2.5) 		1.8
(-3) 		4.4
(-0.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.6
(-0.4)
A 		3
(-1.9)
A 		4.6
(-1.2)
A 		0.7
(-2.8)
A 		14.7
(3)
P 		0.3
(-3)
A 		14
B 8.4
(1.7)
A 		10.4
(3)
A 		1.2
(-2.9)
A 		7.9
(1.4)
A 		10.1
(2.8)
A 		1.1
(-3)
A 		9
C 0.6
(-2.8)
A 		11.2
(3)
P 		4.8
(-0.5)
A 		0.2
(-3)
A 		2.2
(-1.9)
A 		2.9
(-1.5)
A 		11
avr 5.2
(0) 		8.2
(2.4) 		3.5
(-1.3) 		2.9
(-1.8) 		9
(3) 		1.4
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193331_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12575
Sequence Type Exemplar sequence
Representative Public ID M01B2.9 NCBI
Target Description M01B2.9 /REP_DB=WormBase Gene ID /WP=CE16270 /TR=O17960 /GB=CAB05564.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074375(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074375 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-39) (srsx-39) mRNA, complete cds. 10/11 A 
GENEFINDER00000027847 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15257718:15259355:-1 11/11 None
M01B2.9 ENSEMBL cdna:known chromosome:CEL140:V:15258275:15259355:-1 gene:M01B2.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027838 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15258274-15259355(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Gene Symbol srsx-39
Ensembl M01B2.9
Entrez Gene 187360 Entrez gene
SwissProt O17960 EMBL-EBI
WormBase CE38208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 1.0E-177
blast CAB03427 Hypothetical protein T26E4.14 [Caenorhabditis elegans] ref|NP_506944.2| Serpentine Receptor, class SX family member (srsx-38) [Caenorhabditis elegans] 1.0E-164
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 1.0E-148
blast CAB03427 Hypothetical protein T26E4.14 [Caenorhabditis elegans] ref|NP_506944.2| Serpentine Receptor, class SX family member (srsx-38) [Caenorhabditis elegans] 1.0E-138
blast CAH10781 Hypothetical protein F53F8.2 [Caenorhabditis elegans] emb|CAB04462.2| Hypothetical protein F53F8.2 [Caenorhabditis elegans] ref|NP_507994.2| Serpentine Receptor, class SX family member (srsx-35) [Caenorhabditis elegans] 1.0E-121
blast CAB05564 Hypothetical protein M01B2.9 [Caenorhabditis elegans] ref|NP_506776.2| Serpentine Receptor, class SX family member (srsx-39) [Caenorhabditis elegans] 1.0E-119
blast CAB03427 Hypothetical protein T26E4.14 [Caenorhabditis elegans] ref|NP_506944.2| Serpentine Receptor, class SX family member (srsx-38) [Caenorhabditis elegans] 1.0E-111
blast CAH10781 Hypothetical protein F53F8.2 [Caenorhabditis elegans] emb|CAB04462.2| Hypothetical protein F53F8.2 [Caenorhabditis elegans] ref|NP_507994.2| Serpentine Receptor, class SX family member (srsx-35) [Caenorhabditis elegans] 1.0E-101
blast CAH10781 Hypothetical protein F53F8.2 [Caenorhabditis elegans] emb|CAB04462.2| Hypothetical protein F53F8.2 [Caenorhabditis elegans] ref|NP_507994.2| Serpentine Receptor, class SX family member (srsx-35) [Caenorhabditis elegans] 3.0E-88
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506776.2 7 4-26,38-60,75-97,117-139,164-186,199-218,238-260
M01B2.9 5 4-26,39-61,126-148,161-180,200-222
GENEFINDER00000027847 5 4-26,39-61,126-148,161-180,200-222
Sequence
Target Sequence 
>C. ELEGANS:193331_AT
tcttccggcaagaaatttcatattcgtggtttgcctggttccggaatcgttgggtcatgc
gtatgacttgttcgcgctcacatcttttttcattaaccttttcgtgctaccaatctatgt
ctatgtctacttgaaaatcaaaaaaatgggactgaacagctcaatgaaagcggtgttcaa
gtcactcatgattaccgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCGGCAAGAAATTTCATATTC 680 617 324 Antisense
TCATATTCGTGGTTTGCCTGGTTCC 261 619 341 Antisense
CTGGTTCCGGAATCGTTGGGTCATG 664 55 358 Antisense
TCCGGAATCGTTGGGTCATGCGTAT 304 593 363 Antisense
CGCTCACATCTTTTTTCATTAACCT 601 255 398 Antisense
TCACATCTTTTTTCATTAACCTTTT 126 629 401 Antisense
ACCTTTTCGTGCTACCAATCTATGT 348 85 419 Antisense
GCTACCAATCTATGTCTATGTCTAC 345 303 429 Antisense
ATGTCTATGTCTACTTGAAAATCAA 370 49 440 Antisense
TCAATGAAAGCGGTGTTCAAGTCAC 213 631 484 Antisense
TTCAAGTCACTCATGATTACCGTAT 242 685 499 Antisense
Sequence Source Affymetrix Proprietary Database