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[193330_at] 7 transmembrane receptor (rhodopsin family)

Description T22G5.4 /REP_DB=WormBase Gene ID /WP=CE13988 /TR=Q9XVI7 /GB=CAB03389.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 4grp_high_8_8 > 18      6grp_total > 18      4grp_total > 30      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 116.1
(3)
P 		59.4
(-2.3)
A 		52.1
(-3)
A 		61.9
(-2.1)
P 		64
B 123.1
(3)
P 		92
(0)
P 		60.1
(-3)
P 		120.2
(2.7)
P 		63
C 129.5
(3)
P 		74.6
(-2)
P 		64.2
(-3)
P 		123.9
(2.5)
P 		65
avr 122.9
(3) 		75.3
(-1.5) 		58.8
(-3) 		102
(1) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 160.3
(3)
P 		71.3
(-2.2)
P 		58.4
(-3)
A 		78.1
(-1.8)
A 		79.5
(-1.8)
P 		93.4
(-0.9)
P 		102
B 103.3
(3)
P 		84.5
(1.4)
P 		66.8
(-0.1)
A 		33.6
(-3)
A 		62.6
(-0.5)
P 		79.1
(0.9)
P 		70
C 90.5
(2.5)
P 		95.1
(3)
P 		63.2
(-0.5)
P 		89.2
(2.3)
A 		65.2
(-0.3)
M 		40.8
(-3)
P 		54
avr 118
(3) 		83.6
(-0.7) 		62.8
(-3) 		67
(-2.5) 		69.1
(-2.3) 		71.1
(-2.1) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 42.3
(3)
P 		12.9
(-2.3)
A 		13.6
(-2.2)
A 		9.1
(-3)
P 		33
B 39.3
(3)
P 		22.7
(-0.9)
P 		13.9
(-3)
P 		25.6
(-0.2)
P 		25
C 42.9
(3)
P 		21.5
(-2.8)
P 		22.4
(-2.6)
P 		20.9
(-3)
P 		22
avr 41.5
(3) 		19
(-2.4) 		16.6
(-3) 		18.5
(-2.5) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 29.6
(3)
P 		25.3
(1.5)
P 		12.7
(-3)
A 		19.8
(-0.5)
A 		24
(1)
P 		22.7
(0.6)
P 		17
B 36
(3)
P 		28.1
(1.3)
P 		16.2
(-1.4)
A 		8.9
(-3)
A 		25.4
(0.7)
P 		29.5
(1.6)
P 		27
C 33.5
(3)
P 		29
(1.6)
P 		16.1
(-2.3)
P 		17.9
(-1.7)
A 		21.1
(-0.8)
M 		13.7
(-3)
P 		20
avr 33
(3) 		27.5
(1.2) 		15
(-3) 		15.5
(-2.8) 		23.5
(-0.2) 		22
(-0.7) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14623
Sequence Type Exemplar sequence
Representative Public ID T22G5.4 NCBI
Target Description T22G5.4 /REP_DB=WormBase Gene ID /WP=CE13988 /TR=Q9XVI7 /GB=CAB03389.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074041 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-19) (srsx-19) mRNA, complete cds. 11/11 None
SNAP00000016896 ENSEMBL cdna:SNAP chromosome:CEL140:V:13890915:13892047:1 9/11 None
GENEFINDER00000016902 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13890247:13892047:1 11/11 None
T22G5.4 ENSEMBL cdna:known chromosome:CEL140:V:13890247:13892047:1 gene:T22G5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13890246-13892047(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Gene Symbol srsx-19
Ensembl T22G5.4
Entrez Gene 188760 Entrez gene
SwissProt Q9XVI7 EMBL-EBI
WormBase CE13988 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03389 Hypothetical protein T22G5.4 [Caenorhabditis elegans] ref|NP_506442.1| Serpentine Receptor, class SX family member (srsx-19) [Caenorhabditis elegans] 0.0
blast CAE66211 Hypothetical protein CBG11453 [Caenorhabditis briggsae] 1.0E-155
blast CAB03389 Hypothetical protein T22G5.4 [Caenorhabditis elegans] ref|NP_506442.1| Serpentine Receptor, class SX family member (srsx-19) [Caenorhabditis elegans] 2.0E-98
blast CAE72077 Hypothetical protein CBG19163 [Caenorhabditis briggsae] 4.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506442.1 7 5-27,40-62,85-107,119-141,161-183,217-239,249-271
T22G5.4 7 5-27,40-62,85-107,119-141,161-183,217-239,249-271
SNAP00000016896 4 2-21,36-58,85-107,117-139
GENEFINDER00000016902 7 5-27,40-62,85-107,119-141,161-183,217-239,249-271
Sequence
Target Sequence 
>C. ELEGANS:193330_AT
aattatttccacgtctgttgttgcctgcaatattctaactcttctcatcacaattgtttc
agttttcgtggcaattagaaaatcccaagatatgcggaaccaccgccattcttctgtcac
cagacggaacagcaccgttgaagaacgtagaaaagtgtttcgctcaacgttctacatgat
gtcaatctacatattttgttggatgacgtcatcgatatgctttcgtgttcttttttacat
gtttgaaaacgaaacaaacattgttccatacatgccatatttggcaataatcacaatgcc
aaacttttgtcaagcatactttgtcacctatttccgatctccgagatttcgaaaagcata
tcgtgagcattttcattggctcactttcggatgcatgtatccagatgtatttgatggacc
agaactgcggggtggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATTTCCACGTCTGTTGTTGCC 12 177 492 Antisense
TGCCTGCAATATTCTAACTCTTCTC 402 585 513 Antisense
AACTCTTCTCATCACAATTGTTTCA 420 141 528 Antisense
CAAGATATGCGGAACCACCGCCATT 332 185 577 Antisense
CCATTCTTCTGTCACCAGACGGAAC 24 271 597 Antisense
AAAGTGTTTCGCTCAACGTTCTACA 682 119 643 Antisense
GACGTCATCGATATGCTTTCGTGTT 670 377 696 Antisense
AACATTGTTCCATACATGCCATATT 139 139 748 Antisense
TCAAGCATACTTTGTCACCTATTTC 403 629 801 Antisense
TCATTGGCTCACTTTCGGATGCATG 202 619 864 Antisense
GATGGACCAGAACTGCGGGGTGGAG 398 407 904 Antisense
Sequence Source Affymetrix Proprietary Database