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[193328_at] SCP-like extracellular Proteins (2 domains)

Description ZK384.2 /REP_DB=WormBase Gene ID /WP=CE16723 /TR=O62508 /GB=CAB05011.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=SCP-like extracellular Proteins (2 domains)
Cluster 6grp_total > 67      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 47.5
(-2.1)
A 		9.3
(-3)
A 		13.7
(-2.9)
A 		266.1
(3)
A 		257
B 21.2
(-2.6)
A 		7.4
(-3)
A 		8.3
(-3)
A 		191.5
(3)
A 		184
C 19.7
(-2.7)
A 		6.3
(-3)
A 		8.8
(-2.9)
A 		257.5
(3)
A 		251
avr 29.5
(-2.4) 		7.7
(-3) 		10.3
(-2.9) 		238.4
(3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.6
(-1.6)
A 		3.2
(-3)
A 		6.2
(-1.3)
A 		3.4
(-2.9)
A 		3.9
(-2.6)
A 		13.5
(3)
A 		10
B 4.4
(-1.3)
A 		5.3
(-0.6)
A 		3.6
(-2)
A 		4
(-1.7)
A 		2.3
(-3)
A 		9.9
(3)
A 		8
C 4.4
(-2.8)
A 		6.6
(-1.1)
A 		4.1
(-3)
A 		5
(-2.3)
A 		5.2
(-2.2)
A 		12.2
(3)
A 		8
avr 4.8
(-2.3) 		5
(-2.1) 		4.6
(-2.4) 		4.1
(-2.8) 		3.8
(-3) 		11.9
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 17.3
(-0.5)
A 		2
(-3)
A 		3.6
(-2.7)
A 		39
(3)
A 		37
B 6.8
(-2.2)
A 		1.8
(-3)
A 		1.9
(-3)
A 		40.8
(3)
A 		39
C 6.5
(-2.3)
A 		1.8
(-3)
A 		3.1
(-2.8)
A 		43.4
(3)
A 		42
avr 10.2
(-1.7) 		1.9
(-3) 		2.9
(-2.8) 		41.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1
(-2.8)
A 		1.1
(-2.5)
A 		1.4
(-1.8)
A 		0.9
(-3)
A 		1.2
(-2.3)
A 		3.3
(3)
A 		2
B 1.5
(-1.7)
A 		1.8
(-1.1)
A 		0.9
(-3)
A 		1
(-2.8)
A 		0.9
(-3)
A 		3.7
(3)
A 		3
C 1.6
(-1.8)
A 		2
(-1.1)
A 		1.1
(-2.8)
A 		1
(-3)
A 		1.7
(-1.6)
A 		4.1
(3)
A 		3
avr 1.4
(-2.1) 		1.6
(-1.7) 		1.1
(-2.8) 		1
(-3) 		1.3
(-2.3) 		3.7
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14644
Sequence Type Exemplar sequence
Representative Public ID ZK384.2 NCBI
Target Description ZK384.2 /REP_DB=WormBase Gene ID /WP=CE16723 /TR=O62508 /GB=CAB05011.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=SCP-like extracellular Proteins (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075254(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075254 NCBI Caenorhabditis elegans ZK384.2 (ZK384.2) mRNA, complete cds. 11/11 None
SNAP00000029487 ENSEMBL cdna:SNAP chromosome:CEL140:V:18736063:18737040:-1 10/11 None
GENEFINDER00000029489 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18735433:18737040:-1 10/11 None
ZK384.2 ENSEMBL cdna:known chromosome:CEL140:V:18735446:18737040:-1 gene:ZK384.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18735445-18737040(-) 100.0 100.0
Public Domain and Genome References
Gene Title SCP-like extracellular Proteins (2 domains)
Ensembl ZK384.2
Entrez Gene 191309 Entrez gene
SwissProt O62508 EMBL-EBI
WormBase CE16723 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05011 Hypothetical protein ZK384.2 [Caenorhabditis elegans] ref|NP_507655.1| ZK384.2 [Caenorhabditis elegans] 1.0E-113
blast CAB05011 Hypothetical protein ZK384.2 [Caenorhabditis elegans] ref|NP_507655.1| ZK384.2 [Caenorhabditis elegans] 3.0E-92
blast CAB05011 Hypothetical protein ZK384.2 [Caenorhabditis elegans] ref|NP_507655.1| ZK384.2 [Caenorhabditis elegans] 2.0E-50
blast CAA94348 Hypothetical protein F49E11.9 [Caenorhabditis elegans] ref|NP_502502.1| SCP-Like extracellular protein family member (scl-1) [Caenorhabditis elegans] 3.0E-34
blast CAE56328 Hypothetical protein CBG23993 [Caenorhabditis briggsae] 1.0E-32
blast CAA94348 Hypothetical protein F49E11.9 [Caenorhabditis elegans] ref|NP_502502.1| SCP-Like extracellular protein family member (scl-1) [Caenorhabditis elegans] 7.0E-21
blast CAA94350 Hypothetical protein F49E11.6 [Caenorhabditis elegans] ref|NP_502499.1| F49E11.6 [Caenorhabditis elegans] 7.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.1E-42
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 8.8E-12
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.8E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029489 1 64-86
Sequence
Target Sequence 
>C. ELEGANS:193328_AT
ccacggcccagcgggagattgtcgacttccataatagcctgcgatcccagttggccaacg
gggattacgtggtggatggggtcccgaagcccccagcaaaggatatgatgaaaatgaaat
gggacccaattctagccgggatggcgaaaaacaacgcggctacctgtccgagcctgttca
ccgactccaaaatgctcggcagaaattattatcaccggctggcaaatgtcacgtcaggtt
cgctggataaatatgccctattcgcggtgaaaaagtgggagcgccaattccaagagcgcg
gatggaagaaccaagagttccgaatgttcggcgaccatcggctactcacctcggcaacac
agatggtctgggccaccaccagacacgtcggctgtggtgtgaatatctgtgacgctgaaa
agaatttgtttgggtacaggaacaaggtggtggtgatttgtgagtatcagagcaaaggta
acatccatggcctgccaatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGGCCCAGCGGGAGATTGTCGA 423 273 77 Antisense
GACTTCCATAATAGCCTGCGATCCC 13 369 100 Antisense
TGCGATCCCAGTTGGCCAACGGGGA 627 579 116 Antisense
ATGGGACCCAATTCTAGCCGGGATG 399 49 195 Antisense
GAAAAACAACGCGGCTACCTGTCCG 86 355 222 Antisense
ATCACCGGCTGGCAAATGTCACGTC 537 25 287 Antisense
ATGTCACGTCAGGTTCGCTGGATAA 87 49 302 Antisense
CCGAATGTTCGGCGACCATCGGCTA 127 263 396 Antisense
TACTCACCTCGGCAACACAGATGGT 342 643 419 Antisense
CACCACCAGACACGTCGGCTGTGGT 136 203 450 Antisense
GTAACATCCATGGCCTGCCAATCTA 553 461 554 Antisense
Sequence Source Affymetrix Proprietary Database