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[193324_at]

Description F25H5.1A /REP_DB=WormBase Gene ID /WP=CE15895 /TR=O17832 /GB=CAB02980.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=LIM domain containing proteins (6 domains)
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_high_8_8 > 49      6grp_highest_nonorm > 60      6grp_total > 03      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 616.5
(3)
P 		240.2
(-3)
P 		281
(-2.3)
P 		255.8
(-2.8)
A 		376
B 463.7
(3)
P 		338.8
(-0.2)
P 		418.5
(1.8)
P 		228
(-3)
P 		236
C 507.8
(3)
P 		393.5
(0.4)
P 		355.2
(-0.5)
P 		244.8
(-3)
P 		263
avr 529.3
(3) 		324.2
(-1.3) 		351.6
(-0.7) 		242.9
(-3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 687
1 2 3 4 5 6 range
A 391.9
(-2.1)
P 		683
(3)
P 		343.3
(-3)
P 		441.5
(-1.3)
P 		398.6
(-2)
P 		356.3
(-2.8)
P 		340
B 416.1
(0.8)
P 		522.2
(3)
P 		230.1
(-3)
P 		358.6
(-0.4)
P 		368.4
(-0.2)
P 		252.1
(-2.5)
P 		292
C 842.8
(3)
P 		473.3
(-0.2)
P 		381.7
(-1)
P 		377.7
(-1.1)
P 		404
(-0.8)
P 		155.9
(-3)
P 		687
avr 550.3
(2.8) 		559.5
(3) 		318.4
(-1.7) 		392.6
(-0.3) 		390.3
(-0.3) 		254.8
(-3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 224.5
(3)
P 		52.2
(-2.5)
P 		73.5
(-1.8)
P 		37.4
(-3)
A 		187
B 147.9
(3)
P 		83.7
(-0.9)
P 		97
(-0.1)
P 		48.6
(-3)
P 		99
C 168.1
(3)
P 		113.1
(0.4)
P 		123.8
(0.9)
P 		41.3
(-3)
P 		127
avr 180.2
(3) 		83
(-1.2) 		98.1
(-0.6) 		42.4
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 72.2
(-3)
P 		242.9
(3)
P 		74.8
(-2.9)
P 		112
(-1.6)
P 		120.3
(-1.3)
P 		86.8
(-2.5)
P 		171
B 144.8
(1.5)
P 		173.8
(3)
P 		55.9
(-3)
P 		95
(-1)
P 		149.7
(1.8)
P 		94
(-1.1)
P 		118
C 312.4
(3)
P 		144.4
(-0.9)
P 		97.1
(-2)
P 		76
(-2.5)
P 		130.7
(-1.2)
P 		52.2
(-3)
P 		260
avr 176.5
(2.4) 		187
(3) 		75.9
(-3) 		94.3
(-2) 		133.6
(0.1) 		77.7
(-2.9) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1026
Sequence Type Exemplar sequence
Representative Public ID F25H5.1A NCBI
Target Description F25H5.1A /REP_DB=WormBase Gene ID /WP=CE15895 /TR=O17832 /GB=CAB02980.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=LIM domain containing proteins (6 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026239 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-15) (tag-15) mRNA, complete cds. 11/11 None
F25H5.1f ENSEMBL cdna:known chromosome:CEL140:I:9189942:9218461:-1 gene:F25H5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024324 5/11 Cross Hyb Matching Probes None
GENEFINDER00000024327 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565712 6 1 NM_001026236 180879_at (11), 181484_s_at (11)
NM_001026239 174855_at (11), 180879_at (11), 181484_s_at (11), 193324_at (11)
NM_001030056 180879_at (11), 181484_s_at (11)
NM_001030057 181483_at (11), 181484_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9190477-9200882(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAJ30229 Hypothetical protein F25H5.1f [Caenorhabditis elegans] emb|CAI46551.1| Hypothetical protein F25H5.1f [Caenorhabditis elegans] ref|NP_001021410.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAB02980 Hypothetical protein F25H5.1a [Caenorhabditis elegans] emb|CAI46552.1| Hypothetical protein F25H5.1a [Caenorhabditis elegans] ref|NP_001025227.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
blast CAJ30228 Hypothetical protein F25H5.1c [Caenorhabditis elegans] emb|CAI46550.1| Hypothetical protein F25H5.1c [Caenorhabditis elegans] ref|NP_001021407.1| Temporarily Assigned Gene name family member (tag-15) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.8E-10
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 2.2E-19
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.0E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.4E-18
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-10
Pfam IPR010442 EMBL-EBI PET 2.1E-44
Sequence
Target Sequence 
>C. ELEGANS:193324_AT
caattacaggaatcggtggcgccaaattcatttcattcgaggatcgacattggcataatg
attgtttcatttgtgcacaatgtacaacatctcttgtagggaaaggatttattaccgatg
gacatgagatattgtgtcccgagtgtgcgaagtggtcccaccacgaaattctttgcttca
ctttcattcattcatgtgttgtcggtggtaaccgtatccctgtgttacccccatttatct
ccaaacaaaacacgcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTACAGGAATCGGTGGCGCCAA 80 181 1295 Antisense
GTGGCGCCAAATTCATTTCATTCGA 127 493 1310 Antisense
GTGCACAATGTACAACATCTCTTGT 354 481 1367 Antisense
GAAAGGATTTATTACCGATGGACAT 153 361 1395 Antisense
TGAGATATTGTGTCCCGAGTGTGCG 76 569 1419 Antisense
TCCCGAGTGTGCGAAGTGGTCCCAC 616 597 1431 Antisense
TCCCACCACGAAATTCTTTGCTTCA 142 599 1450 Antisense
TCTTTGCTTCACTTTCATTCATTCA 570 615 1464 Antisense
CATTCATTCATGTGTTGTCGGTGGT 122 217 1479 Antisense
TCGGTGGTAACCGTATCCCTGTGTT 446 601 1496 Antisense
TTATCTCCAAACAAAACACGCAAAA 409 679 1529 Antisense
Sequence Source Affymetrix Proprietary Database