[Home] | [Total List]

[193323_at] potassium channel protein like

Description F53C11.6 /REP_DB=WormBase Gene ID /WP=CE10914 /GEN=twk-10 /TR=Q93764 /GB=CAB02119.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=potassium channel protein like
Cluster 6grp_total > 09      4grp_total > 0      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 4.3
(-3)
A 		5.7
(-2.8)
A 		24.3
(-0.3)
A 		48.1
(3)
A 		44
B 6.2
(1.7)
A 		4.7
(-2.2)
A 		6.7
(3)
A 		4.4
(-3)
A 		2
C 5.2
(-1.3)
A 		3
(-2.9)
A 		2.9
(-3)
A 		11.1
(3)
A 		8
avr 5.2
(-2.7) 		4.5
(-3) 		11.3
(-0.6) 		21.2
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 50.4
(3)
A 		4
(-2.8)
A 		3.9
(-2.8)
A 		5.6
(-2.6)
A 		5.1
(-2.7)
A 		2.4
(-3)
A 		48
B 5.1
(-2.4)
A 		1.8
(-3)
A 		1.8
(-3)
A 		36.2
(3)
A 		2.3
(-2.9)
A 		2.9
(-2.8)
A 		34
C 3
(-2.6)
A 		12.4
(3)
A 		2.3
(-3)
A 		11.5
(2.5)
A 		2.3
(-3)
A 		3.6
(-2.2)
A 		10
avr 19.5
(3) 		6.1
(-1.8) 		2.7
(-3) 		17.8
(2.4) 		3.2
(-2.8) 		3
(-2.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.6
(-2.6)
A 		1.2
(-3)
A 		6.4
(2.4)
A 		7
(3)
A 		6
B 2
(3)
A 		1.2
(-1.4)
A 		1.5
(0.3)
A 		0.9
(-3)
A 		1
C 1.7
(1.8)
A 		0.9
(-3)
A 		1
(-2.4)
A 		1.9
(3)
A 		1
avr 1.8
(-1.1) 		1.1
(-3) 		3
(2.2) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.3
(3)
A 		1.4
(-2.4)
A 		0.9
(-2.8)
A 		1.4
(-2.4)
A 		1.5
(-2.4)
A 		0.6
(-3)
A 		9
B 1.8
(-2.1)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		9.6
(3)
A 		0.9
(-2.7)
A 		1.1
(-2.5)
A 		9
C 1.1
(-2.1)
A 		3.8
(3)
A 		0.6
(-3)
A 		2.3
(0.2)
A 		0.7
(-2.8)
A 		1.2
(-1.9)
A 		3
avr 4.1
(2.5) 		1.9
(-0.9) 		0.6
(-3) 		4.4
(3) 		1
(-2.4) 		1
(-2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12881
Sequence Type Exemplar sequence
Representative Public ID F53C11.6 NCBI
Target Description F53C11.6 /REP_DB=WormBase Gene ID /WP=CE10914 /GEN=twk-10 /TR=Q93764 /GB=CAB02119.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=potassium channel protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074015 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-32) (twk-32) mRNA, complete cds. 11/11 None
SNAP00000007161 ENSEMBL cdna:SNAP chromosome:CEL140:V:13799230:13803138:1 11/11 None
GENEFINDER00000007165 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13799230:13803381:1 11/11 None
F53C11.6 ENSEMBL cdna:known chromosome:CEL140:V:13800011:13802560:1 gene:F53C11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13800010-13802560(+) 100.0 100.0
Public Domain and Genome References
Gene Title potassium channel protein like
Gene Symbol twk-32
Ensembl F53C11.6
Entrez Gene 192075 Entrez gene
SwissProt Q93764 EMBL-EBI
WormBase CE10914 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
5267 potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02119 Hypothetical protein F53C11.6 [Caenorhabditis elegans] ref|NP_506416.1| TWiK family of potassium channels family member (twk-32) [Caenorhabditis elegans] 0.0
blast CAE66237 Hypothetical protein CBG11481 [Caenorhabditis briggsae] 0.0
blast CAE66977 Hypothetical protein CBG12373 [Caenorhabditis briggsae] 4.0E-46
blast CAE66977 Hypothetical protein CBG12373 [Caenorhabditis briggsae] 5.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 8.9E-13
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.1E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 8.9E-13
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506416.1 6 7-29,104-123,144-166,234-256,268-285,295-317
F53C11.6 6 7-29,104-123,144-166,234-256,268-285,295-317
SNAP00000007161 6 32-54,122-144,149-171,243-265,275-297,302-324
GENEFINDER00000007165 6 32-54,122-144,149-171,243-265,275-297,302-324
Sequence
Target Sequence 
>C. ELEGANS:193323_AT
gaaactgtaacagcgcttcatcacattcggttgactgcattcaaacaacttactcaaaac
tacgatgaacatcttagaggaaaagctcctgatccaccgagacatcttattgcatctcat
gccacggctgattcagttatgctccgatggagtgctccaatttatgtcgatgagggaaaa
cgttattggtacactatcacttacaaaccacgaacacctcaaagacggaataatgtggtt
gctgttgattttatcaataaggatcgatatttggttactggtttgaagtctttcacgttg
tacgagttcagtgtttacgtaaccacacgatacggacaaagtgtgcctatcaaagtacaa
gaatatacagaaccctgcacagttccgcaatcagttcgaatagatgcgatatccgatgaa
acggcgacaatttcatggagagctccaaaaatgaataatggtccagagtcctacgtgatt
cagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGTAACAGCGCTTCATCACA 535 357 1081 Antisense
GCTTCATCACATTCGGTTGACTGCA 601 305 1095 Antisense
GACTGCATTCAAACAACTTACTCAA 322 375 1113 Antisense
GATCCACCGAGACATCTTATTGCAT 373 415 1171 Antisense
TTGCATCTCATGCCACGGCTGATTC 475 703 1190 Antisense
GCTGATTCAGTTATGCTCCGATGGA 76 297 1207 Antisense
GGAGTGCTCCAATTTATGTCGATGA 365 517 1229 Antisense
TATCACTTACAAACCACGAACACCT 338 659 1275 Antisense
TATACAGAACCCTGCACAGTTCCGC 382 657 1444 Antisense
GCACAGTTCCGCAATCAGTTCGAAT 400 317 1457 Antisense
GTCCAGAGTCCTACGTGATTCAGTT 258 477 1541 Antisense
Sequence Source Affymetrix Proprietary Database