[Home] | [Total List]

[193322_at] 7TM chemoreceptor, srw family

Description C25F9.7 /REP_DB=WormBase Gene ID /WP=CE17471 /TR=O62076 /GB=CAB03920.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 30      4grp_total > 02      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 30.7
(-1.4)
A 		23.4
(-1.8)
A 		5.1
(-3)
A 		99.8
(3)
P 		95
B 44.9
(3)
A 		15.4
(-3)
A 		31.1
(0.2)
A 		39.6
(1.9)
A 		30
C 1
(-3)
A 		35.2
(2)
A 		42.3
(3)
P 		19.7
(-0.3)
A 		41
avr 25.5
(-2.8) 		24.7
(-3) 		26.2
(-2.7) 		53
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 24.5
(-0.8)
A 		42.2
(1.3)
A 		57.2
(3)
A 		48.3
(2)
M 		37
(0.7)
A 		4.9
(-3)
A 		52
B 9.9
(-1.9)
A 		33.3
(3)
A 		4.4
(-3)
A 		11.9
(-1.4)
A 		5
(-2.9)
A 		12.9
(-1.2)
A 		29
C 25.7
(-0.5)
A 		47.9
(2.4)
A 		8.3
(-2.8)
A 		52.6
(3)
A 		6.7
(-3)
A 		13.4
(-2.1)
A 		46
avr 20
(-1.1) 		41.1
(3) 		23.3
(-0.5) 		37.6
(2.3) 		16.2
(-1.9) 		10.4
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.2
(1.5)
A 		5.1
(-1.3)
A 		1.3
(-3)
A 		14.6
(3)
P 		13
B 14.3
(3)
A 		3.8
(-3)
A 		7.2
(-1.1)
A 		8.4
(-0.4)
A 		11
C 0.3
(-3)
A 		10.1
(1.1)
A 		14.8
(3)
P 		3.3
(-1.8)
A 		15
avr 8.6
(2.5) 		6.3
(-3) 		7.8
(0.6) 		8.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.5
(-1.6)
A 		15
(3)
A 		12.5
(1.9)
A 		12.3
(1.8)
M 		11.2
(1.3)
A 		1.2
(-3)
A 		14
B 3.4
(-1.6)
A 		11.1
(3)
A 		1.1
(-3)
A 		3.2
(-1.7)
A 		2
(-2.5)
A 		4.8
(-0.8)
A 		10
C 9.5
(0.6)
A 		14.6
(3)
A 		2.1
(-3)
A 		10.6
(1.1)
A 		2.2
(-3)
A 		4.5
(-1.8)
A 		13
avr 5.8
(-1.6) 		13.6
(3) 		5.2
(-2) 		8.7
(0.1) 		5.1
(-2) 		3.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13487
Sequence Type Exemplar sequence
Representative Public ID C25F9.7 NCBI
Target Description C25F9.7 /REP_DB=WormBase Gene ID /WP=CE17471 /TR=O62076 /GB=CAB03920.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075374 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-86) (srw-86) mRNA, complete cds. 11/11 None
C25F9.7 ENSEMBL cdna:known chromosome:CEL140:V:19400401:19403273:-1 gene:C25F9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19400400-19403273(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-86
Ensembl C25F9.7
Entrez Gene 180271 Entrez gene
SwissProt O62076 EMBL-EBI
WormBase CE17471 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03920 Hypothetical protein C25F9.7 [Caenorhabditis elegans] ref|NP_507775.1| Serpentine Receptor, class W family member (srw-86) [Caenorhabditis elegans] 1.0E-171
blast CAB03921 Hypothetical protein C25F9.1 [Caenorhabditis elegans] ref|NP_507781.2| Serpentine Receptor, class W family member (srw-85) [Caenorhabditis elegans] 1.0E-97
blast CAA21642 Hypothetical protein Y43F8A.4 [Caenorhabditis elegans] ref|NP_507772.1| Serpentine Receptor, class W family member (srw-84) [Caenorhabditis elegans] 8.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507775.1 4 122-139,146-168,205-224,243-265
C25F9.7 4 122-139,146-168,205-224,243-265
Sequence
Target Sequence 
>C. ELEGANS:193322_AT
ttgctattagtgattttttgttcctaattttctattttgatgggggtacacgggactttt
tacaagccggggtgccttatgagtgccgcccaccaaaatcactacttctagtctactgga
ctcaaatccttcaagccttcagagacattttccagagagtttcagcatatcttgggatgt
ttcttgccctcttacggtatctggtgatgaagtacggtaccattaggaagacatttctaa
gcctaatagattgttggaaattatttgttttgctaatattgattagctccctgattactt
gctttttaaatttaaaattatcaattgtgcccagcacaaaatggcggccgccgagcagct
gcaccatgtaccccgccaattcaacttttcccggttatggaactattcaaactgacttct
acaagcttttacctccgatttcctacatttattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTATTAGTGATTTTTTGTTCCT 436 701 479 Antisense
TATTTTGATGGGGGTACACGGGACT 706 659 511 Antisense
ACTGGACTCAAATCCTTCAAGCCTT 415 97 593 Antisense
AATCCTTCAAGCCTTCAGAGACATT 420 167 603 Antisense
CCAGAGAGTTTCAGCATATCTTGGG 182 273 630 Antisense
AGCATATCTTGGGATGTTTCTTGCC 612 77 642 Antisense
GGTATCTGGTGATGAAGTACGGTAC 570 505 674 Antisense
GCTCCCTGATTACTTGCTTTTTAAA 493 299 764 Antisense
TGCCCAGCACAAAATGGCGGCCGCC 620 583 806 Antisense
CTGACTTCTACAAGCTTTTACCTCC 315 211 890 Antisense
TACCTCCGATTTCCTACATTTATTT 550 649 908 Antisense
Sequence Source Affymetrix Proprietary Database