[Home] | [Total List]

[193319_at] Drosophila chaoptin protein like

Description C44H4.2 /REP_DB=WormBase Gene ID /WP=CE08723 /GEN=sym-5 /TR=Q93373 /GB=CAB01864.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Drosophila chaoptin protein like
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_high_8_8 > 46      6grp_highest_nonorm > 52      6grp_total > 90      4grp_total > 50      6grp_cgc > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1174
1 2 3 4 range
A 54.2
(-3)
A 		1203
(3)
P 		943.2
(1.6)
P 		68.5
(-2.9)
A 		1149
B 80.7
(-3)
P 		1038.3
(3)
P 		854.1
(1.8)
P 		84.8
(-3)
P 		958
C 29.4
(-3)
P 		1061.5
(3)
P 		873.1
(1.9)
P 		42.9
(-2.9)
A 		1032
avr 54.8
(-3) 		1100.9
(3) 		890.1
(1.8) 		65.4
(-2.9) 		1046

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 713
1 2 3 4 5 6 range
A 954
(3)
P 		587.4
(-0.3)
P 		452.2
(-1.6)
P 		737.5
(1)
P 		671.4
(0.4)
P 		297.1
(-3)
P 		657
B 796.6
(2.2)
P 		658.9
(0.9)
P 		622.3
(0.5)
P 		888
(3)
P 		617.4
(0.5)
P 		241.3
(-3)
P 		647
C 767.7
(1.4)
P 		545.4
(-0.7)
P 		488.9
(-1.3)
P 		940.5
(3)
P 		584.6
(-0.4)
P 		303.8
(-3)
P 		637
avr 839.4
(2.8) 		597.2
(0.3) 		521.1
(-0.5) 		855.3
(3) 		624.5
(0.6) 		280.7
(-3) 		575
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 19.7
(-2.8)
A 		261.1
(3)
P 		246.6
(2.7)
P 		10
(-3)
A 		251
B 25.7
(-2.8)
P 		256.4
(3)
P 		197.9
(1.5)
P 		18.1
(-3)
P 		238
C 9.7
(-2.9)
P 		305.2
(3)
P 		304.3
(3)
P 		7.2
(-3)
A 		298
avr 18.4
(-2.8) 		274.2
(3) 		249.6
(2.4) 		11.8
(-3) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 175.9
(1.6)
P 		208.9
(3)
P 		98.5
(-1.8)
P 		187
(2)
P 		202.6
(2.7)
P 		72.3
(-3)
P 		137
B 277.2
(3)
P 		219.3
(1.1)
P 		151.1
(-1)
P 		235.2
(1.7)
P 		250.9
(2.2)
P 		90
(-3)
P 		187
C 284.6
(3)
P 		166.4
(-0.9)
P 		124.4
(-2.3)
P 		189.1
(-0.1)
P 		189.2
(-0.1)
P 		101.7
(-3)
P 		183
avr 245.9
(3) 		198.2
(1.2) 		124.7
(-1.6) 		203.8
(1.4) 		214.2
(1.8) 		88
(-3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17562
Sequence Type Exemplar sequence
Representative Public ID C44H4.2 NCBI
Target Description C44H4.2 /REP_DB=WormBase Gene ID /WP=CE08723 /GEN=sym-5 /TR=Q93373 /GB=CAB01864.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Drosophila chaoptin protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078024 NCBI Caenorhabditis elegans SYnthetic lethal with Mec family member (sym-5) (sym-5) mRNA, complete cds. 11/11 A 
SNAP00000043715 ENSEMBL cdna:SNAP chromosome:CEL140:X:14577952:14580749:1 11/11 None
GENEFINDER00000043729 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14578156:14580749:1 11/11 None
C44H4.2 ENSEMBL cdna:known chromosome:CEL140:X:14578007:14580830:1 gene:C44H4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14578006-14580749(+) 100.0 100.0
Public Domain and Genome References
Gene Title Drosophila chaoptin protein like
Gene Symbol sym-5
Ensembl C44H4.2
Entrez Gene 181554 Entrez gene
SwissProt Q93373 EMBL-EBI
WormBase CE08723 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1632809_AT dm
DROSGENOME1:146784_AT dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01864 Hypothetical protein C44H4.2 [Caenorhabditis elegans] ref|NP_510425.1| SYnthetic lethal with Mec family member (sym-5) [Caenorhabditis elegans] 0.0
blast CAE63200 Hypothetical protein CBG07555 [Caenorhabditis briggsae] 0.0
blast CAB01865 Hypothetical protein C44H4.3 [Caenorhabditis elegans] ref|NP_510426.1| SYnthetic lethal with Mec family member (sym-1) [Caenorhabditis elegans] emb|CAB43345.1| SYM-1 protein [Caenorhabditis elegans] 4.0E-51
blast CAB01865 Hypothetical protein C44H4.3 [Caenorhabditis elegans] ref|NP_510426.1| SYnthetic lethal with Mec family member (sym-1) [Caenorhabditis elegans] emb|CAB43345.1| SYM-1 protein [Caenorhabditis elegans] 8.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.056
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.14
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0011
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.03
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.84
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0086
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.3E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.12
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.056
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.14
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0011
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.03
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.84
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0086
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.3E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.12
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.056
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.14
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.024
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.21
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0011
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.03
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.84
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0086
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 1.3E-4
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510425.1 1 654-676
C44H4.2 1 654-676
SNAP00000043715 1 689-711
GENEFINDER00000043729 1 621-643
Sequence
Target Sequence 
>C. ELEGANS:193319_AT
attcgccaatcgtccatggaagcagggacatcgcaagaatcagtggaagctaccagtcaa
aaaattccctctactactgacattatcgacagaccaaacgttgtcctcccattcccagta
ccatttttgaaaagaggtccaaacctatcagagtcgaaaaaagttgagtcaactgatatg
ccatcaacttcacaagtgttccacactttgcctccgtcaattctcattgagcctggaagc
actccaaaagtggcgcaaccatctactgaagctaatatcaagagtgagcacattgacgaa
ttcgctctagcttcttcaaattccaatgagccaactctccaaccgcgtctcgaaaagtcc
ttcttcacaacaactatcattttcatttgcgttggcacagccgttattgtgctcgttgtg
gttattgctggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGCCAATCGTCCATGGAAGCAG 579 7 1600 Antisense
GCTACCAGTCAAAAAATTCCCTCTA 274 303 1648 Antisense
ATTCCCTCTACTACTGACATTATCG 248 9 1663 Antisense
CACAAGTGTTCCACACTTTGCCTCC 141 195 1790 Antisense
CCTCCGTCAATTCTCATTGAGCCTG 358 267 1810 Antisense
AGTGGCGCAACCATCTACTGAAGCT 176 59 1848 Antisense
GCACATTGACGAATTCGCTCTAGCT 129 317 1887 Antisense
CGCTCTAGCTTCTTCAAATTCCAAT 494 255 1902 Antisense
AATTCCAATGAGCCAACTCTCCAAC 161 179 1918 Antisense
GTCTCGAAAAGTCCTTCTTCACAAC 206 471 1946 Antisense
GTGCTCGTTGTGGTTATTGCTGGAC 568 479 2008 Antisense
Sequence Source Affymetrix Proprietary Database