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[193318_at] 7 transmembrane receptor (rhodopsin family)

Description C29F3.6 /REP_DB=WormBase Gene ID /WP=CE08440 /TR=O17615 /GB=CAB02802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 74      4grp_total > 40      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 1.8
(-3)
A 		44.7
(-1)
A 		94.6
(1.3)
M 		132.8
(3)
A 		131
B 13.6
(-3)
A 		109
(1.6)
A 		137
(3)
P 		39.5
(-1.7)
A 		123
C 2.2
(-3)
A 		79.4
(2.9)
P 		80.1
(3)
P 		73.6
(2.5)
P 		78
avr 5.9
(-3) 		77.7
(1.4) 		103.9
(3) 		82
(1.7) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 2.5
(-3)
A 		25.3
(-1.4)
A 		89.2
(2.9)
P 		90.6
(3)
P 		75
(1.9)
A 		64.9
(1.2)
P 		88
B 2.4
(-3)
A 		26.2
(-1.4)
A 		50.1
(0.3)
A 		68.2
(1.5)
P 		90.1
(3)
P 		59.1
(0.9)
A 		88
C 2.4
(-3)
A 		44.2
(-1.1)
A 		38.7
(-1.3)
A 		132
(3)
P 		69.8
(0.1)
P 		87.5
(0.9)
P 		130
avr 2.4
(-3) 		31.9
(-1.1) 		59.3
(0.6) 		96.9
(3) 		78.3
(1.8) 		70.5
(1.3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 0.7
(-3)
A 		9.7
(-0.8)
A 		24.7
(3)
M 		19.4
(1.7)
A 		24
B 4.3
(-3)
A 		26.9
(1.9)
A 		31.7
(3)
P 		8.4
(-2.1)
A 		27
C 0.7
(-3)
A 		22.8
(1.9)
P 		27.9
(3)
P 		12.4
(-0.4)
P 		27
avr 1.9
(-3) 		19.8
(1.1) 		28.1
(3) 		13.4
(-0.4) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 0.5
(-3)
A 		9
(-0.7)
A 		19.4
(2)
P 		23
(3)
P 		22.6
(2.9)
A 		15.8
(1.1)
P 		23
B 0.8
(-3)
A 		8.7
(-1.7)
A 		12.2
(-1.1)
A 		18.1
(-0.1)
P 		36.6
(3)
P 		22
(0.6)
A 		36
C 0.9
(-3)
A 		13.5
(-0.3)
A 		9.9
(-1.1)
A 		26.6
(2.4)
P 		22.6
(1.6)
P 		29.3
(3)
P 		28
avr 0.7
(-3) 		10.4
(-0.8) 		13.8
(-0) 		22.6
(1.9) 		27.3
(3) 		22.4
(1.9) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14456
Sequence Type Exemplar sequence
Representative Public ID C29F3.6 NCBI
Target Description C29F3.6 /REP_DB=WormBase Gene ID /WP=CE08440 /TR=O17615 /GB=CAB02802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074408 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-58) (srx-58) mRNA, complete cds. 11/11 None
C29F3.6 ENSEMBL cdna:known chromosome:CEL140:V:15355160:15356448:1 gene:C29F3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15355159-15356488(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7 transmembrane receptor (rhodopsin family)
Gene Symbol srx-58
Ensembl C29F3.6
Entrez Gene 183007 Entrez gene
SwissProt O17615 EMBL-EBI
WormBase CE34526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02802 Hypothetical protein C29F3.6 [Caenorhabditis elegans] ref|NP_506809.2| Serpentine Receptor, class X family member (srx-58) [Caenorhabditis elegans] 1.0E-159
blast AAB94251 Serpentine receptor, class x protein 66 [Caenorhabditis elegans] ref|NP_504085.2| Serpentine Receptor, class X family member (srx-66) [Caenorhabditis elegans] 3.0E-51
blast AAB94250 Serpentine receptor, class x protein 65 [Caenorhabditis elegans] ref|NP_504086.2| Serpentine Receptor, class X family member (srx-65) [Caenorhabditis elegans] 3.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506809.2 6 10-31,43-65,80-102,123-145,176-195,223-242
C29F3.6 6 10-31,43-65,80-102,123-145,176-195,223-242
Sequence
Target Sequence 
>C. ELEGANS:193318_AT
atctgtttggtgtccgattttctataaaacaatgttcaatttgaaatatacgaaactatt
tatttttgccgtttggttgatttcgtttttaatcggatcgttatttcatattgttttatg
tcgcattcggttcaatgcagatttaatattattcaccattattctggcaccatcctattg
ttttgaaattggacgatacggtgatttatttcgaaattcgtgtattgtaataatcatgat
gattttggatgtattcacattgataaaagtgaaactgatttccaatgaaataaagaaatc
tgtcagcgagcaagcggtccaacagttcacgagccgagatcgccgattcttagcacaagc
cgtaactcaagggtcgctttttcttcttgctacgatggttttttttcctacacggttttc
cgtgaattcttgggttactttcctgggcggcaattcatgtggcagatgggtgggttactt
tatttttgcaattttaaaattagataataaaatttacagactcatcatgattctcttcaa
cccggaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGTTTGGTGTCCGATTTTCTAT 277 33 333 Antisense
TTCTGGCACCATCCTATTGTTTTGA 435 693 494 Antisense
AAATCTGTCAGCGAGCAAGCGGTCC 43 119 628 Antisense
AAGCGGTCCAACAGTTCACGAGCCG 2 147 644 Antisense
AGCCGAGATCGCCGATTCTTAGCAC 656 81 664 Antisense
GCACAAGCCGTAACTCAAGGGTCGC 178 315 685 Antisense
TCAAGGGTCGCTTTTTCTTCTTGCT 341 631 699 Antisense
TGCTACGATGGTTTTTTTTCCTACA 520 575 720 Antisense
GTGAATTCTTGGGTTACTTTCCTGG 122 481 754 Antisense
ACTTTCCTGGGCGGCAATTCATGTG 219 103 769 Antisense
TCATGATTCTCTTCAACCCGGAAAT 48 623 857 Antisense
Sequence Source Affymetrix Proprietary Database