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[193317_at] Mitochondrial carrier proteins (2 domains)

Description Y43C5B.3 /REP_DB=WormBase Gene ID /WP=CE19158 /TR=Q9XTH0 /GB=CAA19513.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Mitochondrial carrier proteins (2 domains)
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_high_8_8 > 44      6grp_highest_nonorm > 90      6grp_total > 87      4grp_total > 52      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 79.7
(0.3)
P 		54.4
(-2.3)
M 		106.4
(3)
P 		47.5
(-3)
M 		59
B 97.5
(2.8)
P 		99.8
(3)
P 		57.9
(-1.5)
A 		43.4
(-3)
P 		56
C 68.8
(-2.1)
P 		119
(3)
P 		80.6
(-0.9)
P 		60.2
(-3)
A 		59
avr 82
(1.7) 		91.1
(3) 		81.6
(1.6) 		50.4
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 64.4
(-3)
P 		93.9
(-1.2)
P 		114
(0.1)
P 		67.9
(-2.8)
P 		116.8
(0.3)
P 		160.5
(3)
P 		96
B 81.9
(-2.6)
P 		94.1
(-1.9)
P 		75.1
(-3)
P 		79.5
(-2.7)
P 		151.2
(1.6)
P 		174.8
(3)
P 		100
C 74.3
(-2.6)
P 		72.1
(-2.7)
P 		64.3
(-3)
P 		115.8
(-0.7)
P 		115.4
(-0.7)
P 		199.8
(3)
P 		136
avr 73.5
(-3) 		86.7
(-2.2) 		84.5
(-2.4) 		87.7
(-2.2) 		127.8
(0.1) 		178.4
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 29
(3)
P 		11.8
(-1.7)
M 		27.8
(2.7)
P 		6.9
(-3)
M 		22
B 31.1
(3)
P 		24.6
(1.2)
P 		13.4
(-1.9)
A 		9.3
(-3)
P 		22
C 22.8
(0.2)
P 		34.2
(3)
P 		28.1
(1.5)
P 		10.1
(-3)
A 		24
avr 27.6
(3) 		23.5
(1.7) 		23.1
(1.6) 		8.8
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 11.9
(-3)
P 		33.4
(1.7)
P 		24.8
(-0.2)
P 		17.2
(-1.8)
P 		35.2
(2.1)
P 		39.1
(3)
P 		27
B 28.5
(-1.7)
P 		31.3
(-1.3)
P 		18.2
(-3)
P 		21.1
(-2.6)
P 		61.4
(2.5)
P 		65.2
(3)
P 		47
C 27.5
(-1.7)
P 		22
(-2.3)
P 		16.4
(-3)
P 		23.3
(-2.2)
P 		37.3
(-0.5)
P 		66.9
(3)
P 		51
avr 22.6
(-2.5) 		28.9
(-1.5) 		19.8
(-3) 		20.5
(-2.9) 		44.6
(1) 		57.1
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9767
Sequence Type Exemplar sequence
Representative Public ID Y43C5B.3 NCBI
Target Description Y43C5B.3 /REP_DB=WormBase Gene ID /WP=CE19158 /TR=Q9XTH0 /GB=CAA19513.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Mitochondrial carrier proteins (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069507 NCBI Caenorhabditis elegans Y43C5B.3 (Y43C5B.3) mRNA, complete cds. 11/11 None
Y43C5B.3 ENSEMBL cdna:known chromosome:CEL140:IV:10353222:10355033:1 gene:Y43C5B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003240 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10353227-10355039(+) 100.0 100.0
Public Domain and Genome References
Gene Title Mitochondrial carrier proteins (2 domains)
Ensembl Y43C5B.3
Entrez Gene 177922 Entrez gene
SwissProt Q9XTH0 EMBL-EBI
WormBase CE36622 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94371 Hypothetical protein Y43C5B.3 [Caenorhabditis elegans] emb|CAA19513.2| Hypothetical protein Y43C5B.3 [Caenorhabditis elegans] ref|NP_501908.2| Y43C5B.3 [Caenorhabditis elegans] 0.0
blast CAE70867 Hypothetical protein CBG17655 [Caenorhabditis briggsae] 1.0E-171
blast CAA95794 Hypothetical protein F13G3.7a [Caenorhabditis elegans] ref|NP_001021103.1| F13G3.7a [Caenorhabditis elegans] 3.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.4E-16
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.7E-11
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 3.2E-10
Sequence
Target Sequence 
>C. ELEGANS:193317_AT
gtttggccagttttgcgactcaatccatttttgttccaactgatattattgcacaatata
tgatgatttataagaatactgacaagctgactgctggacatgataaatctgtaattgatg
gcgttcgaaatcatgtgaaaaatggaagtggattgggaacaagtgtgattaaggcaatct
ataagacagatggaattctcggtttttatcgtggattttgggcatcaacagctgtctatg
ttcctcaaatgctgacattttggccaagttactactggatgttgggacttttcaataagg
taccgtaccgcacccttcatcccgccacaaatcgcagtcttctttttgatcaagcagttg
cagcaacactgggaggagtcatctcaactgtagcaaccaatccaatggaattgtttcgtg
tcagacttcaagttcatcgtggcagttactcgaaaaccttagagactatgcttcgtgacg
aaaagacggctgttttcacgaaaggacttacaccgcgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGCCAGTTTTGCGACTCAATC 284 451 434 Antisense
GCGACTCAATCCATTTTTGTTCCAA 502 289 448 Antisense
GAATTCTCGGTTTTTATCGTGGATT 604 323 626 Antisense
GGATTTTGGGCATCAACAGCTGTCT 256 509 646 Antisense
GCTGTCTATGTTCCTCAAATGCTGA 645 295 664 Antisense
ATCGCAGTCTTCTTTTTGATCAAGC 184 37 764 Antisense
GGAGTCATCTCAACTGTAGCAACCA 293 517 808 Antisense
GGAATTGTTTCGTGTCAGACTTCAA 594 533 840 Antisense
CAGACTTCAAGTTCATCGTGGCAGT 586 205 855 Antisense
CCTTAGAGACTATGCTTCGTGACGA 618 269 890 Antisense
TCACGAAAGGACTTACACCGCGCAT 345 627 929 Antisense
Sequence Source Affymetrix Proprietary Database