[Home] | [Total List]

[193315_s_at] RNA helicase (DEAH subfamily)

Description K03H1.2 /REP_DB=WormBase Gene ID /WP=CE01027 /GEN=mog-1 /TR=SW:P34498 /GB=CAA82662.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RNA helicase (DEAH subfamily)
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 75      6grp_total > 46      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 35      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 825.9
(3)
P 		585
(-2.4)
P 		556
(-3)
P 		663.9
(-0.6)
P 		270
B 735.1
(3)
P 		550.7
(-3)
P 		595.6
(-1.5)
P 		632.3
(-0.3)
P 		184
C 906.6
(3)
P 		518.9
(-3)
P 		718.7
(0.1)
P 		593.8
(-1.8)
P 		388
avr 822.5
(3) 		551.5
(-3) 		623.4
(-1.4) 		630
(-1.3) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 915.6
(1.6)
P 		994.6
(3)
P 		747.2
(-1.3)
P 		856.4
(0.6)
P 		650.5
(-3)
P 		877
(0.9)
P 		344
B 858.6
(1.7)
P 		785.1
(0.1)
P 		822.2
(0.9)
P 		834.5
(1.2)
P 		652.1
(-3)
P 		913.7
(3)
P 		262
C 862.8
(2.6)
P 		856.6
(2.5)
P 		879.6
(3)
P 		789.6
(1.1)
P 		598.9
(-3)
P 		814.8
(1.6)
P 		281
avr 879
(3) 		878.8
(3) 		816.3
(1.5) 		826.8
(1.7) 		633.8
(-3) 		868.5
(2.7) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 300.7
(3)
P 		127
(-2.1)
P 		145.3
(-1.6)
P 		97.2
(-3)
P 		204
B 234.4
(3)
P 		136
(-2.9)
P 		138
(-2.8)
P 		134.7
(-3)
P 		100
C 300.1
(3)
P 		149.2
(-1.5)
P 		250.5
(1.5)
P 		100.1
(-3)
P 		200
avr 278.4
(3) 		137.4
(-2) 		177.9
(-0.6) 		110.7
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 168.8
(-2.8)
P 		353.7
(3)
P 		162.7
(-3)
P 		217.2
(-1.3)
P 		196.3
(-1.9)
P 		213.5
(-1.4)
P 		191
B 298.8
(1.2)
P 		261.3
(-0.4)
P 		199.7
(-3)
P 		221
(-2.1)
P 		264.9
(-0.2)
P 		340.7
(3)
P 		141
C 319.8
(3)
P 		261.4
(0.8)
P 		223.9
(-0.6)
P 		158.8
(-3)
P 		193.8
(-1.7)
P 		272.8
(1.2)
P 		161
avr 262.5
(1.2) 		292.1
(3) 		195.4
(-3) 		199
(-2.8) 		218.3
(-1.6) 		275.7
(2) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193315_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6544
Sequence Type Exemplar sequence
Representative Public ID K03H1.2 NCBI
Target Description K03H1.2 /REP_DB=WormBase Gene ID /WP=CE01027 /GEN=mog-1 /TR=SW:P34498 /GB=CAA82662.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RNA helicase (DEAH subfamily)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066811 NCBI Caenorhabditis elegans Masculinisation Of Germline family member (mog-1) (mog-1) mRNA, complete cds. 11/11 None
GENEFINDER00000019364 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9949364:9956104:-1 11/11 None
SNAP00000019351 ENSEMBL cdna:SNAP chromosome:CEL140:III:9952080:9956104:-1 11/11 None
K03H1.2 ENSEMBL cdna:known chromosome:CEL140:III:9951957:9956104:-1 gene:K03H1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9952075-9956100(-) 100.0 100.0
Public Domain and Genome References
Gene Title RNA helicase (DEAH subfamily)
Gene Symbol mog-1
Ensembl K03H1.2
Entrez Gene 176409 Entrez gene
SwissProt P34498 EMBL-EBI
WormBase CE01027 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250273_AT RNA helicase, putative at
CANINE:1601737_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38 cfa
CANINE:1587479_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38 cfa
CANINE_2:CFA.6204.1.A1_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38 cfa
CANINE_2:CFAAFFX.30989.1.S1_S_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38 cfa
DROSGENOME1:145055_AT dm
DROSOPHILA_2:1623333_A_AT dm
DROSGENOME1:154291_AT dm
DROSGENOME1:145052_AT dm
CHICKEN:GGA.12336.1.S1_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 gga
HG-U95AV2:37390_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 hs
HUGENEFL:D86977_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 hs
HG-U133A:209178_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 hs
HG-U133_PLUS_2:209178_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 hs
HG-U133A_2:209178_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 hs
U133_X3P:G3123905_3P_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 hs
HG-U95D:77109_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 hs
HG-U95D:87182_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 hs
MU11KSUBB:MSA.37622.0_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 mm
MG-U74BV2:162595_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 mm
MOE430A:1426786_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 mm
MOUSE430A_2:1426786_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 mm
MOUSE430_2:1426786_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 mm
MOE430B:1453751_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 mm
MOUSE430_2:1453751_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 mm
MU19KSUBB:TC29191_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38, mRNA (cDNA clone IMAGE:4981492) mm
MU19KSUBC:TC37443_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38, mRNA (cDNA clone IMAGE:4981492) mm
RAE230A:1371669_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 (predicted) rn
RAT230_2:1371669_AT DEAH (Asp-Glu-Ala-His) box polypeptide 38 (predicted) rn
YEAST_2:1769992_AT RNA helicase in the DEAH-box family involved in the second catalytic step of splicing, exhibits ATP-dependent RNA unwinding activity Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82662 Hypothetical protein K03H1.2 [Caenorhabditis elegans] ref|NP_499212.1| Masculinisation Of Germline family member (mog-1) [Caenorhabditis elegans] sp|P34498|MOG1_CAEEL Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-1 (Sex determination protein mog-1) (Masculinization of germ line protein 1) gb|AAD13795.1| sex determination protein MOG-1 [Caenorhabditis elegans] 0.0
blast CAE65079 Hypothetical protein CBG09937 [Caenorhabditis briggsae] 0.0
blast AAH63744 Hypothetical protein LOC393850 [Danio rerio] ref|NP_957170.1| hypothetical protein LOC393850 [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007502 EMBL-EBI Helicase-associated region 7.4E-52
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 5.9E-13
Sequence
Target Sequence 
>C. ELEGANS:193315_S_AT
aatggtgtgccgacaactatttacacgtaaaagctttgaaaaaggttcgagaagttcgtg
ctcaattgaaggaaattatgcaagatctcaagcttccattgatctcaaacggaagtgaat
gggatattgtgagaaaatgcatttgctctgcgtatttccacaatgcagctcgtcttaaag
gaattggtgaatatgtcaatgttcgtaccggaattccatgcttccttcatccaacttcag
ctctttttggaatgggtttcatgcctgattacgtggtgtaccacgaattgattatgacag
ccaaagaatatatgcaatgtgtaactgctgtcgatgcaatctggcttgctgaacttggac
ccatgttctattcgatcaaagaatcgaaacaatcacgcaaagaactgaaaatggagagtg
tccgaacggttgaaacgatggaagcagagatgcgagaggcgcagaaagaaatggaacggc
ggaaggaagaaagtgacaaggcgttcaaacgaccagaatcttccaggcgtgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGTGTGCCGACAACTATTTACA 233 163 2819 Antisense
TATGCAAGATCTCAAGCTTCCATTG 21 657 2895 Antisense
AAATGCATTTGCTCTGCGTATTTCC 652 119 2953 Antisense
TGCGTATTTCCACAATGCAGCTCGT 46 585 2967 Antisense
GTTCGTACCGGAATTCCATGCTTCC 270 443 3019 Antisense
TTCATCCAACTTCAGCTCTTTTTGG 551 687 3044 Antisense
GGGTTTCATGCCTGATTACGTGGTG 385 495 3072 Antisense
AACTGCTGTCGATGCAATCTGGCTT 71 143 3141 Antisense
AATCTGGCTTGCTGAACTTGGACCC 594 167 3156 Antisense
ACTTGGACCCATGTTCTATTCGATC 115 103 3171 Antisense
ACGACCAGAATCTTCCAGGCGTGTT 104 93 3327 Antisense
Sequence Source Affymetrix Proprietary Database