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[193314_at]

Description ZC334.5 /REP_DB=WormBase Gene ID /WP=CE19310 /TR=Q9XUI7 /GB=CAB04966.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (2 domains)
Cluster 6grp_total > 93      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 45.7
(-3)
A 		200.8
(1.7)
P 		244.4
(3)
P 		99.3
(-1.4)
A 		199
B 24.4
(-3)
A 		248.8
(3)
P 		205.8
(1.9)
P 		51.5
(-2.3)
A 		224
C 18.8
(-3)
A 		270.3
(3)
P 		216.7
(1.7)
P 		46.8
(-2.3)
A 		252
avr 29.6
(-3) 		240
(3) 		222.3
(2.5) 		65.9
(-2) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 103.6
(-3)
A 		171.3
(3)
P 		121.7
(-1.4)
A 		153.5
(1.4)
P 		159.1
(1.9)
P 		133.8
(-0.3)
P 		68
B 137
(-1.1)
A 		125.5
(-2.2)
P 		117.5
(-3)
A 		180.4
(3)
M 		127.2
(-2.1)
P 		147.3
(-0.2)
P 		63
C 64.3
(-3)
A 		181.2
(0.6)
A 		102.7
(-1.8)
A 		98.9
(-1.9)
P 		261.3
(3)
P 		95.2
(-2.1)
P 		197
avr 101.6
(-3) 		159.3
(1.3) 		114
(-2.1) 		144.3
(0.2) 		182.5
(3) 		125.4
(-1.2) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 16.6
(-2.7)
A 		43.6
(0.5)
P 		63.9
(3)
P 		14.5
(-3)
A 		49
B 7.8
(-3)
A 		61.4
(3)
P 		47.7
(1.5)
P 		11
(-2.6)
A 		54
C 6.2
(-3)
A 		77.7
(3)
P 		75.5
(2.8)
P 		7.9
(-2.9)
A 		72
avr 10.2
(-3) 		60.9
(2.8) 		62.4
(3) 		11.1
(-2.9) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 19.1
(-3)
A 		60.9
(3)
P 		26.5
(-1.9)
A 		38.9
(-0.2)
P 		48
(1.1)
P 		32.6
(-1.1)
P 		42
B 47.7
(1.4)
A 		41.8
(0)
P 		28.5
(-3)
A 		47.8
(1.4)
M 		51.7
(2.3)
P 		54.9
(3)
P 		26
C 23.8
(-2.6)
A 		55.3
(0.3)
A 		26.1
(-2.4)
A 		19.9
(-3)
P 		84.6
(3)
P 		31.9
(-1.9)
P 		65
avr 30.2
(-2.4) 		52.7
(1.5) 		27
(-3) 		35.5
(-1.5) 		61.4
(3) 		39.8
(-0.8) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.821
Sequence Type Exemplar sequence
Representative Public ID ZC334.5 NCBI
Target Description ZC334.5 /REP_DB=WormBase Gene ID /WP=CE19310 /TR=Q9XUI7 /GB=CAB04966.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026677 NCBI Caenorhabditis elegans ZC334.7 (ZC334.7) mRNA, complete cds. 11/11 None
GENEFINDER00000000610 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14013826:14025305:1 9/11 None
SNAP00000000600 ENSEMBL cdna:SNAP chromosome:CEL140:I:14018685:14019584:1 9/11 None
ZC334.7 ENSEMBL cdna:known chromosome:CEL140:I:14018015:14019584:1 gene:ZC334.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14013756-14019515(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC334.7
Entrez Gene 3565697 Entrez gene
SwissProt Q7YTG3 EMBL-EBI
WormBase CE35203 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T27518 hypothetical protein ZC334.5 - Caenorhabditis elegans 0.0
blast CAB82004 Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] emb|CAH10808.1| Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] ref|NP_493440.2| Y71A12B.12 [Caenorhabditis elegans] 0.0
blast CAB16314 Hypothetical protein F47G4.2 [Caenorhabditis elegans] ref|NP_493455.1| F47G4.2 [Caenorhabditis elegans] 1.0E-158
blast CAE45093 Hypothetical protein ZC334.7 [Caenorhabditis elegans] ref|NP_001021848.1| ZC334.7 [Caenorhabditis elegans] 2.0E-88
blast T27518 hypothetical protein ZC334.5 - Caenorhabditis elegans 2.0E-88
blast CAE45093 Hypothetical protein ZC334.7 [Caenorhabditis elegans] ref|NP_001021848.1| ZC334.7 [Caenorhabditis elegans] 2.0E-76
blast T27518 hypothetical protein ZC334.5 - Caenorhabditis elegans 2.0E-76
blast CAE71814 Hypothetical protein CBG18830 [Caenorhabditis briggsae] 7.0E-30
Sequence
Target Sequence 
>C. ELEGANS:193314_AT
tacacacgtttctagcaacctttctgttaccaatcctagccgacactctactcaccgctg
atcttaccaccggtcatcaggcttcagcagcggccgtcttccaatccgaaccatcctccg
actacttctccacctccgacttctccaccacatccccccgacaatatcccaccgatgaag
ccgacgaggagctctacgccctacaaaaagccgccaagccccagttttacccccgaccgc
agaacaactacggaggttacggtggctatcgtccgaatccccctcagccattcggttatt
cttatgtgggatatattaatcgacaggcccgacgctacccggtaatgatgtacaccctga
ttcaatgtgtgccgtgccagagagccaagcatcttttggctaccacctatggagatattc
catcgcactttttggaactggtcggagacgaggactggcagcgtcagcttcaagtggatc
tactcaaagtcacccgccaagccaccttcccctacgtcttcgtctgcgggaactttatcg
gtggatcgtcggacctcttcaacatgcatcactcgggacaactacggcaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACACGTTTCTAGCAACCTTTCT 217 643 1784 Antisense
CAACCTTTCTGTTACCAATCCTAGC 362 185 1799 Antisense
CGACAATATCCCACCGATGAAGCCG 614 251 1942 Antisense
TTACGGTGGCTATCGTCCGAATCCC 707 681 2040 Antisense
CCCTCAGCCATTCGGTTATTCTTAT 691 259 2064 Antisense
TCAATGTGTGCCGTGCCAGAGAGCC 567 631 2145 Antisense
CATCTTTTGGCTACCACCTATGGAG 355 213 2173 Antisense
CATCGCACTTTTTGGAACTGGTCGG 543 209 2204 Antisense
GACGAGGACTGGCAGCGTCAGCTTC 395 377 2230 Antisense
TTTATCGGTGGATCGTCGGACCTCT 451 597 2317 Antisense
ATCACTCGGGACAACTACGGCAGGC 256 27 2351 Antisense
Sequence Source Affymetrix Proprietary Database