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[193313_s_at] breast cancer type 1 susceptibility protein (BRCA1)

Description C02F12.8 /REP_DB=WormBase Gene ID /WP=CE03902 /GB=AAK39136.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=breast cancer type 1 susceptibility protein (BRCA1)
Cluster 6grp_total > 36      4grp_total > 52      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 153.2
(3)
A 		129.4
(-2.3)
A 		132.4
(-1.7)
A 		126.4
(-3)
A 		27
B 172
(2.5)
A 		173.2
(2.6)
A 		179.4
(3)
A 		92.7
(-3)
A 		87
C 190.4
(2.7)
A 		194.8
(3)
A 		130.3
(-1.7)
A 		112.3
(-3)
A 		83
avr 171.9
(3) 		165.8
(2.4) 		147.4
(0.6) 		110.5
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 259.2
(3)
A 		249.5
(2.5)
A 		143.9
(-3)
A 		192.4
(-0.5)
A 		178.7
(-1.2)
A 		224.2
(1.2)
A 		115
B 224.2
(0.8)
A 		267.6
(3)
A 		147.9
(-3)
A 		228.7
(1.1)
A 		185.5
(-1.1)
A 		209.7
(0.1)
P 		120
C 207.4
(0.1)
P 		245.8
(3)
A 		215.9
(0.7)
A 		166.2
(-3)
A 		185.9
(-1.5)
A 		229.2
(1.7)
A 		80
avr 230.3
(1.3) 		254.3
(3) 		169.2
(-3) 		195.8
(-1.1) 		183.4
(-2) 		221
(0.7) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 55.8
(3)
A 		28.1
(-1.5)
A 		34.6
(-0.4)
A 		18.5
(-3)
A 		37
B 54.8
(3)
A 		42.8
(0.9)
A 		41.6
(0.7)
A 		19.8
(-3)
A 		35
C 63
(3)
A 		56
(2)
A 		45.4
(0.6)
A 		18.9
(-3)
A 		44
avr 57.9
(3) 		42.3
(0.6) 		40.5
(0.3) 		19.1
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 47.8
(-1.3)
A 		88.7
(3)
A 		31.3
(-3)
A 		48.8
(-1.2)
A 		53.9
(-0.6)
A 		54.6
(-0.6)
A 		57
B 78
(1.7)
A 		89.1
(3)
A 		35.9
(-3)
A 		60.6
(-0.2)
A 		75.4
(1.5)
A 		78.2
(1.8)
P 		53
C 76.9
(3)
P 		75
(2.7)
A 		54.9
(-0)
A 		33.4
(-3)
A 		60.2
(0.7)
A 		76.7
(3)
A 		44
avr 67.6
(0.7) 		84.3
(3) 		40.7
(-3) 		47.6
(-2.1) 		63.2
(0.1) 		69.8
(1) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193313_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18194
Sequence Type Exemplar sequence
Representative Public ID C02F12.8 NCBI
Target Description C02F12.8 /REP_DB=WormBase Gene ID /WP=CE03902 /GB=AAK39136.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=breast cancer type 1 susceptibility protein (BRCA1)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076235 NCBI Caenorhabditis elegans C02F12.8 (C02F12.8) mRNA, complete cds. 11/11 None
SNAP00000032664 ENSEMBL cdna:SNAP chromosome:CEL140:X:3690317:3693220:-1 11/11 None
GENEFINDER00000032671 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3690317:3693225:-1 11/11 None
C02F12.8 ENSEMBL cdna:known chromosome:CEL140:X:3690154:3693225:-1 gene:C02F12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3690317-3693221(-) 100.0 100.0
Public Domain and Genome References
Gene Title breast cancer type 1 susceptibility protein (BRCA1)
Ensembl C02F12.8
Entrez Gene 180659 Entrez gene
SwissProt Q11103 EMBL-EBI
WormBase CE03902 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39136 Hypothetical protein C02F12.8 [Caenorhabditis elegans] ref|NP_508636.1| C02F12.8 [Caenorhabditis elegans] sp|Q11103|YL18_CAEEL Hypothetical protein C02F12.8 in chromosome X 0.0
blast CAE68472 Hypothetical protein CBG14271 [Caenorhabditis briggsae] 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:193313_S_AT
gaagcatcaactattgctctacccgacgccaggaaaaagttgacaaaaaaagaaaagcgc
cttatggctgcacagaaggcaaatcaattggaaactgatgacgatgtactggaagcagca
tatcgagaaagacagaagcatgtggagcaagctggtggtgactactcaagctcaggacag
aaagaccaaaaaaagaagcgaggaaaaagacccgtctcgaatccaccgccatcgttgatc
agtccccaaatcctgcatgcagttcaaatggcaattgctaacagagcaaagaagatttca
gaatcgggtcgtccaatttttcacgaaaatttctcatatcaaaaattctatgaaacggtg
gatacttttgtgaaaacttgggaagaaaattcgaatgaaatgaacaaagtgttacagttt
attgaaaaacgcattttggcattcaaaatggttcaacgtccgcaaagtctctcgcgtatt
acaatctacgagcaacttcagctgaacttgccgccagctattcttccggaactatgcttt
ttggccggtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCATCAACTATTGCTCTACCCG 452 341 1465 Antisense
GCTCTACCCGACGCCAGGAAAAAGT 243 297 1480 Antisense
GAAAAGCGCCTTATGGCTGCACAGA 672 353 1516 Antisense
GGTGGTGACTACTCAAGCTCAGGAC 54 499 1618 Antisense
GTCCCCAAATCCTGCATGCAGTTCA 493 475 1706 Antisense
GAATCGGGTCGTCCAATTTTTCACG 357 327 1765 Antisense
ATGGTTCAACGTCCGCAAAGTCTCT 472 51 1912 Antisense
GCAAAGTCTCTCGCGTATTACAATC 139 319 1926 Antisense
AGCAACTTCAGCTGAACTTGCCGCC 80 77 1955 Antisense
GCCAGCTATTCTTCCGGAACTATGC 304 279 1977 Antisense
CGGAACTATGCTTTTTGGCCGGTCT 82 243 1991 Antisense
Sequence Source Affymetrix Proprietary Database