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[193312_at] Mouse GTPASE-ACTIVATING PROTEIN SPA-1 like

Description T27F2.2 /REP_DB=WormBase Gene ID /WP=CE24021 /TR=Q20016 /GB=CAA98469.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Mouse GTPASE-ACTIVATING PROTEIN SPA-1 like
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 16      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 750
1 2 3 4 range
A 1052.7
(3)
P 		480.5
(-2.3)
P 		402.7
(-3)
P 		814.3
(0.8)
P 		650
B 908.7
(3)
P 		393.9
(-2.1)
P 		302.3
(-3)
P 		608.1
(0)
P 		606
C 1007.6
(3)
P 		500.1
(-1.8)
P 		377.8
(-3)
P 		567.7
(-1.2)
P 		630
avr 989.7
(3) 		458.2
(-2.1) 		360.9
(-3) 		663.4
(-0.1) 		629

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 771
1 2 3 4 5 6 range
A 718.5
(1.5)
P 		803.7
(3)
P 		463
(-2.8)
P 		485.6
(-2.4)
P 		462.1
(-2.8)
P 		451.2
(-3)
P 		353
B 993.4
(3)
P 		807
(1.2)
P 		583.4
(-1)
P 		515
(-1.7)
P 		379.2
(-3)
P 		390.5
(-2.9)
P 		614
C 1150.4
(3)
P 		840
(0.6)
P 		686.2
(-0.6)
P 		561.9
(-1.6)
P 		446.5
(-2.5)
P 		381.2
(-3)
P 		769
avr 954.1
(3) 		816.9
(1.5) 		577.5
(-1.1) 		520.8
(-1.8) 		429.3
(-2.8) 		407.6
(-3) 		547
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 383.3
(3)
P 		104.3
(-3)
P 		105.3
(-3)
P 		119.2
(-2.7)
P 		279
B 289.8
(3)
P 		97.3
(-2.3)
P 		70
(-3)
P 		129.6
(-1.4)
P 		220
C 333.5
(3)
P 		143.8
(-1.8)
P 		131.7
(-2.1)
P 		95.7
(-3)
P 		238
avr 335.5
(3) 		115.1
(-2.7) 		102.3
(-3) 		114.8
(-2.7) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 132.4
(-2)
P 		285.8
(3)
P 		100.8
(-3)
P 		123.1
(-2.3)
P 		139.4
(-1.7)
P 		109.8
(-2.7)
P 		185
B 345.7
(3)
P 		268.6
(0.8)
P 		141.7
(-2.8)
P 		136.4
(-3)
P 		154.1
(-2.5)
P 		145.6
(-2.7)
P 		209
C 426.4
(3)
P 		256.3
(-0.3)
P 		174.7
(-1.8)
P 		113
(-3)
P 		144.5
(-2.4)
P 		127.6
(-2.7)
P 		313
avr 301.5
(3) 		270.2
(1.9) 		139.1
(-2.5) 		124.2
(-3) 		146
(-2.3) 		127.7
(-2.9) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14467
Sequence Type Exemplar sequence
Representative Public ID T27F2.2 NCBI
Target Description T27F2.2 /REP_DB=WormBase Gene ID /WP=CE24021 /TR=Q20016 /GB=CAA98469.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Mouse GTPASE-ACTIVATING PROTEIN SPA-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073547 NCBI Caenorhabditis elegans T27F2.2 (T27F2.2) mRNA, complete cds. 11/11 None
T27F2.2 ENSEMBL cdna:known chromosome:CEL140:V:11634033:11637971:-1 gene:T27F2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11634460-11637971(-) 100.0 100.0
Public Domain and Genome References
Gene Title Mouse GTPASE-ACTIVATING PROTEIN SPA-1 like
Ensembl T27F2.2
Entrez Gene 179596 Entrez gene
SwissProt Q20016 EMBL-EBI
WormBase CE24021 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.18176.1.S1_AT similar to signal-induced proliferation-associated 1 like 2 (predicted) cfa
CANINE_2:CFAAFFX.18220.1.S1_AT similar to signal-induced proliferation-associated 1 like 2 (predicted) cfa
CANINE_2:CFAAFFX.18223.1.S1_AT similar to signal-induced proliferation-associated 1 like 2 (predicted) cfa
CANINE_2:CFAAFFX.18223.1.S1_S_AT similar to signal-induced proliferation-associated 1 like 2 (predicted) cfa
CHICKEN:GGA.15420.1.S1_AT signal-induced proliferation-associated 1 like 2 gga
CHICKEN:GGA.20062.1.S1_S_AT signal-induced proliferation-associated 1 like 2 gga
CHICKEN:GGAAFFX.23427.2.S1_AT signal-induced proliferation-associated 1 like 2 gga
CHICKEN:GGAAFFX.23427.2.S1_S_AT signal-induced proliferation-associated 1 like 2 gga
HG-U133_PLUS_2:233587_S_AT signal-induced proliferation-associated 1 like 2 hs
HG-U133B:233587_S_AT signal-induced proliferation-associated 1 like 2 hs
HU35KSUBA:RC_AA464598_AT signal-induced proliferation-associated 1 like 2 hs
U133_X3P:HS2.406879.1.S1_3P_S_AT signal-induced proliferation-associated 1 like 2 hs
U133_X3P:HS.18760.1.S1_3P_A_AT signal-induced proliferation-associated 1 like 2 hs
U133_X3P:HS.18760.0.S1_3P_AT signal-induced proliferation-associated 1 like 2 hs
HG-U133_PLUS_2:1559469_S_AT signal-induced proliferation-associated 1 like 2 hs
HG-U133_PLUS_2:225056_AT signal-induced proliferation-associated 1 like 2 hs
HG-U133B:225056_AT signal-induced proliferation-associated 1 like 2 hs
HG-U95B:49234_S_AT signal-induced proliferation-associated 1 like 2 hs
HG-U95C:65514_AT signal-induced proliferation-associated 1 like 2 hs
HG-U133_PLUS_2:237072_AT Signal-induced proliferation-associated 1 like 2 hs
HG-U133B:237072_AT Signal-induced proliferation-associated 1 like 2 hs
HG-U133_PLUS_2:241131_AT Signal-induced proliferation-associated 1 like 2 hs
HG-U133B:241131_AT Signal-induced proliferation-associated 1 like 2 hs
HG-U95C:65375_AT Signal-induced proliferation-associated 1 like 2 hs
HG-U95D:68269_AT Signal-induced proliferation-associated 1 like 2 hs
HG-U95E:69896_AT Signal-induced proliferation-associated 1 like 2 hs
HG-U95D:86830_AT Signal-induced proliferation-associated 1 like 2 hs
HU35KSUBB:RC_H10413_AT Signal-induced proliferation-associated 1 like 2 hs
U133_X3P:HS.192125.0.A1_3P_AT Signal-induced proliferation-associated 1 like 2 hs
U133_X3P:HS.201988.0.A1_3P_AT Signal-induced proliferation-associated 1 like 2 hs
MU11KSUBA:AA616577_S_AT signal-induced proliferation-associated 1 like 2 mm
MU11KSUBB:MSA.9046.0_S_AT signal-induced proliferation-associated 1 like 2 mm
MG-U74AV2:160961_AT signal-induced proliferation-associated 1 like 2 mm
MOE430A:1434261_AT signal-induced proliferation-associated 1 like 2 mm
MOUSE430A_2:1434261_AT signal-induced proliferation-associated 1 like 2 mm
MOUSE430_2:1434261_AT signal-induced proliferation-associated 1 like 2 mm
MG-U74BV2:109507_AT Signal-induced proliferation-associated 1 like 2, mRNA (cDNA clone IMAGE:30360538) mm
MU11KSUBA:AA407334_AT Signal-induced proliferation-associated 1 like 2, mRNA (cDNA clone IMAGE:30360538) mm
MU19KSUBC:TC35316_AT Signal-induced proliferation-associated 1 like 2, mRNA (cDNA clone IMAGE:30360538) mm
MU19KSUBC:TC40232_I_AT Signal-induced proliferation-associated 1 like 2, mRNA (cDNA clone IMAGE:30360538) mm
RG-U34B:RC_AI044777_AT hypothetical gene supported by NM_001009704 rn
RAE230A:1384037_AT hypothetical gene supported by NM_001009704 rn
RAT230_2:1384037_AT hypothetical gene supported by NM_001009704 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98554 Hypothetical protein T27F2.2 [Caenorhabditis elegans] emb|CAA98469.2| Hypothetical protein T27F2.2 [Caenorhabditis elegans] ref|NP_505948.1| T27F2.2 [Caenorhabditis elegans] 0.0
blast CAE75323 Hypothetical protein CBG23298 [Caenorhabditis briggsae] 0.0
blast XP_872670 PREDICTED: similar to signal-induced proliferation-associated 1 like 2 (predicted) [Bos taurus] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR000331 EMBL-EBI Rap/ran-GAP 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193312_AT
gtgttcgtttgcttatgatttctccatcatcggatggaagcccccgtcgtggatgtgaag
atccaaattgtccagctgtaaagggaatcgaacagatgctgactccagatgcattcgcca
agcagccaattaccaggtaccacgagatgttccgtcagaagaagctcgagtacccgacga
atagcgcgagcagcagtccggcatcatctttcgacgaacgcactttcagtttcacagcca
ccaaaaagaccattgaacagcgagccaacaatatatcaaacaatcgtccgaacacgttgt
cgagtgctagcgtccatgacaacatgtgcacgttactgaatcctccaaaatatctcaaca
gagctcagtctgatgaacaacttcgatctccgcttatggacgagcttaatcgaaaagcac
cactctccgcacgcgaatctacaaatgagagagaatcgagtgaacttgttagaattcaaa
ctcatttggaacgtactgttcaggaaaagcgggcacttgaaatgctcgcacaacaactta
aaaagcaacttattcaggagcgccagtcgcatgacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTCGTTTGCTTATGATTTCTCC 497 485 2162 Antisense
GATGCTGACTCCAGATGCATTCGCC 706 413 2256 Antisense
TTCGCCAAGCAGCCAATTACCAGGT 308 695 2275 Antisense
GTACCCGACGAATAGCGCGAGCAGC 301 459 2331 Antisense
GACGAACGCACTTTCAGTTTCACAG 122 379 2374 Antisense
GTCGAGTGCTAGCGTCCATGACAAC 462 473 2460 Antisense
CATGTGCACGTTACTGAATCCTCCA 687 209 2484 Antisense
ATGAACAACTTCGATCTCCGCTTAT 107 45 2534 Antisense
TTAATCGAAAAGCACCACTCTCCGC 129 683 2567 Antisense
AAGCGGGCACTTGAAATGCTCGCAC 356 145 2668 Antisense
TCAGGAGCGCCAGTCGCATGACAAC 497 623 2715 Antisense
Sequence Source Affymetrix Proprietary Database