[Home] | [Total List]

[193310_s_at] transcription intiation factor TFIIE-BETA

Description F54D5.11 /REP_DB=WormBase Gene ID /WP=CE26813 /TR=Q20776 /GB=CAA91336.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcription intiation factor TFIIE-BETA
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 88      6grp_total > 86      4grp_total > 11      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1108
1 2 3 4 range
A 941.3
(-1.3)
P 		1008.8
(-0.6)
P 		763.5
(-3)
P 		1388.2
(3)
P 		625
B 785
(-2.4)
P 		868.6
(-1.9)
P 		666.7
(-3)
P 		1775
(3)
P 		1108
C 902.1
(-2.6)
P 		861.5
(-3)
P 		885.4
(-2.8)
P 		1503.5
(3)
P 		642
avr 876.1
(-2.2) 		913
(-1.9) 		771.9
(-3) 		1555.6
(3) 		784

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1021
1 2 3 4 5 6 range
A 954.3
(-2.2)
P 		864.4
(-3)
P 		1002.7
(-1.8)
P 		1254.9
(0.5)
P 		1317
(1.1)
P 		1530.5
(3)
P 		666
B 934.4
(-2.8)
P 		904.2
(-3)
P 		1109.4
(-1.4)
P 		1010.1
(-2.2)
P 		1171.8
(-0.9)
P 		1684.2
(3)
P 		780
C 799
(-3)
P 		877.3
(-2.5)
P 		977
(-2)
P 		1222.7
(-0.5)
P 		1325.2
(0.1)
P 		1820.2
(3)
P 		1021
avr 895.9
(-2.9) 		882
(-3) 		1029.7
(-1.9) 		1162.6
(-0.9) 		1271.3
(-0.1) 		1678.3
(3) 		796
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 342.7
(3)
P 		219
(-2.2)
P 		199.6
(-3)
P 		203.2
(-2.8)
P 		143
B 250.3
(-0.4)
P 		214.5
(-1.4)
P 		154.5
(-3)
P 		378.2
(3)
P 		224
C 298.6
(2)
P 		247.7
(-3)
P 		308.6
(3)
P 		253.5
(-2.4)
P 		61
avr 297.2
(3) 		227.1
(-2.5) 		220.9
(-3) 		278.3
(1.5) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 175.9
(-3)
P 		307.4
(0.6)
P 		218.4
(-1.8)
P 		318.3
(0.9)
P 		397.4
(3)
P 		372.6
(2.3)
P 		222
B 325.1
(-2)
P 		301
(-2.4)
P 		269.4
(-3)
P 		267.6
(-3)
P 		476.1
(0.5)
P 		628
(3)
P 		360
C 296.1
(-2.2)
P 		267.7
(-2.6)
P 		248.7
(-3)
P 		245.9
(-3)
P 		428.8
(0)
P 		609.3
(3)
P 		363
avr 265.7
(-2.6) 		292
(-2) 		245.5
(-3) 		277.3
(-2.3) 		434.1
(0.9) 		536.6
(3) 		291
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193310_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3044
Sequence Type Exemplar sequence
Representative Public ID F54D5.11 NCBI
Target Description F54D5.11 /REP_DB=WormBase Gene ID /WP=CE26813 /TR=Q20776 /GB=CAA91336.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcription intiation factor TFIIE-BETA
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064065 NCBI Caenorhabditis elegans F54D5.11 (F54D5.11) mRNA, complete cds. 11/11 None
SNAP00000004664 ENSEMBL cdna:SNAP chromosome:CEL140:II:11540731:11542395:-1 11/11 None
GENEFINDER00000004681 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11540731:11542395:-1 11/11 None
F54D5.11 ENSEMBL cdna:known chromosome:CEL140:II:11540731:11542410:-1 gene:F54D5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11540727-11542392(-) 100.0 100.0
Public Domain and Genome References
Gene Title transcription intiation factor TFIIE-BETA
Ensembl F54D5.11
Entrez Gene 174765 Entrez gene
SwissProt Q20776 EMBL-EBI
WormBase CE26813 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20013.1.S1_AT similar to Transcription initiation factor IIE beta subunit (TFIIE-beta) cfa
CANINE_2:CFA.20799.1.S1_S_AT similar to Transcription initiation factor IIE beta subunit (TFIIE-beta) cfa
CANINE_2:CFAAFFX.10698.1.S1_S_AT similar to Transcription initiation factor IIE beta subunit (TFIIE-beta) cfa
DROSOPHILA_2:1634616_AT Transcription factor IIE dm
DROSGENOME1:143851_AT Transcription factor IIE dm
HG-U133A_2:202680_AT general transcription factor IIE, polypeptide 2, beta 34kDa hs
HG-U133A:202680_AT general transcription factor IIE, polypeptide 2, beta 34kDa hs
HG-U133_PLUS_2:202680_AT general transcription factor IIE, polypeptide 2, beta 34kDa hs
HG-FOCUS:202680_AT general transcription factor IIE, polypeptide 2, beta 34kDa hs
HUGENEFL:X63469_AT general transcription factor IIE, polypeptide 2, beta 34kDa hs
U133_X3P:G4504194_3P_AT general transcription factor IIE, polypeptide 2, beta 34kDa hs
HG-U95AV2:37295_AT general transcription factor IIE, polypeptide 2, beta 34kDa hs
HU35KSUBC:RC_N58488_AT General transcription factor IIE, polypeptide 2, beta 34kDa hs
MOE430A:1448884_AT general transcription factor II E, polypeptide 2 (beta subunit) mm
MOUSE430A_2:1448884_AT general transcription factor II E, polypeptide 2 (beta subunit) mm
MOUSE430_2:1448884_AT general transcription factor II E, polypeptide 2 (beta subunit) mm
MU11KSUBB:MSA.31129.0_S_AT general transcription factor II E, polypeptide 2 (beta subunit) mm
MG-U74AV2:98515_AT general transcription factor II E, polypeptide 2 (beta subunit) mm
MG-U74BV2:164492_F_AT general transcription factor II E, polypeptide 2 (beta subunit) mm
MU19KSUBB:TC31395_AT General transcription factor II E, polypeptide 2 (beta subunit), mRNA (cDNA clone MGC:29023 IMAGE:3501113) mm
RG-U34B:RC_AA996974_AT general transcription factor II E, polypeptide 2 (beta subunit) (predicted) rn
RAE230A:1399114_AT general transcription factor II E, polypeptide 2 (beta subunit) (predicted) rn
RAT230_2:1399114_AT general transcription factor II E, polypeptide 2 (beta subunit) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6367 transcription initiation from RNA polymerase II promoter inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5673 transcription factor TFIIE complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3702 RNA polymerase II transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91336 Hypothetical protein F54D5.11 [Caenorhabditis elegans] emb|CAA70049.1| TFIIE-beta protein [Caenorhabditis elegans] ref|NP_496466.1| F54D5.11 [Caenorhabditis elegans] 1.0E-146
blast CAE59480 Hypothetical protein CBG02864 [Caenorhabditis briggsae] 1.0E-129
blast CAA78245 transcription factor TFIIE-beta [Xenopus laevis] sp|P29540|T2EB_XENLA Transcription initiation factor IIE beta subunit (TFIIE-beta) gb|AAH89287.1| Unknown (protein for MGC:84983) [Xenopus laevis] 6.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR003166 EMBL-EBI Transcription factor TFIIE beta subunit, core 8.7E-46
Sequence
Target Sequence 
>C. ELEGANS:193310_S_AT
gaagcattaccaaacaatcctcgactgataatggaatccgaaaaattcgcatttcgacca
ccttacaaaattaaaggaaaaacttcgttggtagctgtcgcgaggaaacattatcaggac
ggaaaaggtggaattcttgtgtcggatttggctgagtgtgtggctaattatgatgcacta
ctgcagctaaaaattagtaaaattgattttaaaattatcagcggcttatttttcgtacaa
gtatcctctgaagtgatcgttgttccgacacaagtcaataagaaaaaggatcgagtcgtc
ttctacaatgacaaagaattcacattcccagagctcgaagacgatttcaaagccttgtgg
agacacgtgtctgtggatcatttggatgagaagaaaatcgaagaatatctccagaagaag
ggtctcgacgcgatgaaggatctgacgccgaaggttcgaatgcaggctccactgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCATTACCAAACAATCCTCGAC 496 341 379 Antisense
GAAAAATTCGCATTTCGACCACCTT 641 355 418 Antisense
AACTTCGTTGGTAGCTGTCGCGAGG 125 139 459 Antisense
GGAATTCTTGTGTCGGATTTGGCTG 579 531 508 Antisense
GTGATCGTTGTTCCGACACAAGTCA 579 483 631 Antisense
AGGATCGAGTCGTCTTCTACAATGA 709 55 665 Antisense
AGAATTCACATTCCCAGAGCTCGAA 199 75 693 Antisense
AAAGCCTTGTGGAGACACGTGTCTG 146 125 727 Antisense
CACGTGTCTGTGGATCATTTGGATG 232 199 742 Antisense
AAGGATCTGACGCCGAAGGTTCGAA 692 157 814 Antisense
GGTTCGAATGCAGGCTCCACTGAAA 707 505 831 Antisense
Sequence Source Affymetrix Proprietary Database