[Home] | [Total List]

[193309_at] leucine zipper transcription factor(weak)

Description T27B1.1 /REP_DB=WormBase Gene ID /WP=CE05027 /TR=Q22830 /GB=AAA82332.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=leucine zipper transcription factor(weak)
Cluster 6grp_total > 17      4grp_total > 38      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 244.7
(3)
P 		106.3
(-1.8)
A 		70.5
(-3)
A 		122.4
(-1.2)
A 		174
B 180.3
(3)
P 		126.6
(1)
A 		20.8
(-3)
A 		113.5
(0.5)
A 		160
C 217.5
(3)
P 		89.7
(-3)
A 		114.1
(-1.9)
A 		116.4
(-1.7)
A 		128
avr 214.2
(3) 		107.5
(-1.4) 		68.5
(-3) 		117.4
(-1) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 156.3
(3)
P 		129.6
(1.1)
P 		111.2
(-0.2)
A 		105.2
(-0.6)
A 		71.9
(-3)
A 		94.4
(-1.4)
A 		84
B 191.2
(3)
P 		127.6
(-0)
A 		106.6
(-1)
A 		97.1
(-1.5)
A 		65.1
(-3)
A 		113.4
(-0.7)
P 		126
C 190.5
(3)
P 		83.2
(-3)
P 		138.4
(0.1)
M 		110.8
(-1.5)
A 		132.1
(-0.3)
A 		108.4
(-1.6)
M 		107
avr 179.3
(3) 		113.5
(-1.4) 		118.7
(-1.1) 		104.4
(-2) 		89.7
(-3) 		105.4
(-1.9) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 89.1
(3)
P 		23.1
(-2.6)
A 		18.4
(-3)
A 		17.9
(-3)
A 		71
B 57.5
(3)
P 		31.3
(0)
A 		4.8
(-3)
A 		24.2
(-0.8)
A 		53
C 72
(3)
P 		25.8
(-2.3)
A 		39.8
(-0.7)
A 		19.6
(-3)
A 		52
avr 72.9
(3) 		26.7
(-2.3) 		21
(-3) 		20.6
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 28.8
(-1.3)
P 		46.1
(3)
P 		24.2
(-2.4)
A 		26.7
(-1.8)
A 		21.7
(-3)
A 		23
(-2.7)
A 		24
B 66.5
(3)
P 		42.5
(-0.5)
A 		25.9
(-3)
A 		25.7
(-3)
A 		26.4
(-2.9)
A 		42.3
(-0.6)
P 		41
C 70.6
(3)
P 		25.4
(-2.6)
P 		35.2
(-1.4)
M 		22.3
(-3)
A 		42.8
(-0.5)
A 		36.3
(-1.3)
M 		48
avr 55.3
(3) 		38
(-0.4) 		28.4
(-2.3) 		24.9
(-3) 		30.3
(-1.9) 		33.9
(-1.2) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18053
Sequence Type Exemplar sequence
Representative Public ID T27B1.1 NCBI
Target Description T27B1.1 /REP_DB=WormBase Gene ID /WP=CE05027 /TR=Q22830 /GB=AAA82332.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=leucine zipper transcription factor(weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078280 NCBI Caenorhabditis elegans OSMotic avoidance abnormal family member (osm-1) (osm-1) mRNA, complete cds. 11/11 None
SNAP00000030729 ENSEMBL cdna:SNAP chromosome:CEL140:X:16548243:16551059:1 11/11 None
GENEFINDER00000030737 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16548288:16551059:1 11/11 None
T27B1.1 ENSEMBL cdna:known chromosome:CEL140:X:16541243:16551112:1 gene:T27B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16541331-16551059(+) 99.09 100.0
Public Domain and Genome References
Gene Title leucine zipper transcription factor(weak)
Gene Symbol osm-1
Ensembl T27B1.1
Entrez Gene 181715 Entrez gene
SwissProt Q22830 EMBL-EBI
WormBase CE32504 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606126_AT similar to selective LIM binding factor, rat homolog cfa
CANINE_2:CFA.2982.1.S1_S_AT similar to selective LIM binding factor, rat homolog cfa
CANINE_2:CFAAFFX.8570.1.S1_AT similar to selective LIM binding factor, rat homolog cfa
CANINE_2:CFAAFFX.8650.1.S1_S_AT similar to selective LIM binding factor, rat homolog cfa
DROSOPHILA_2:1633181_AT dm
DROSGENOME1:148028_AT dm
CHICKEN:GGA.7147.1.S1_AT selective LIM binding factor, rat homolog gga
CHICKEN:GGAAFFX.24986.1.S1_AT selective LIM binding factor, rat homolog gga
HG-U133_PLUS_2:226324_S_AT selective LIM binding factor, rat homolog hs
HG-U133B:226324_S_AT selective LIM binding factor, rat homolog hs
U133_X3P:HS.127401.0.S1_3P_S_AT selective LIM binding factor, rat homolog hs
HG-U95C:59099_AT selective LIM binding factor, rat homolog hs
HG-U95C:65149_AT selective LIM binding factor, rat homolog hs
HU35KSUBA:AA386297_AT Selective LIM binding factor, rat homolog hs
MU11KSUBA:AA080002_S_AT RIKEN cDNA 493055F24Rik mm
MG-U74AV2:102396_AT RIKEN cDNA 493055F24Rik mm
MOE430A:1423068_AT RIKEN cDNA 493055F24Rik mm
MOUSE430A_2:1423068_AT RIKEN cDNA 493055F24Rik mm
MOUSE430_2:1423068_AT RIKEN cDNA 493055F24Rik mm
MU19KSUBA:TC19079_AT RIKEN cDNA 493055F24Rik (4930553F24Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast NP_510681 OSMotic avoidance abnormal family member (osm-1) [Caenorhabditis elegans] gb|AAA82332.2| Osmotic avoidance abnormal protein 1 [Caenorhabditis elegans] 0.0
blast CAE69962 Hypothetical protein CBG16355 [Caenorhabditis briggsae] 0.0
blast NP_056477 selective LIM binding factor, rat homolog [Homo sapiens] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.3
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.051
Sequence
Target Sequence 
>C. ELEGANS:193309_AT
tcattgccatgcgaaccgcgttggaagagattggagattctgtgccagaagttcagaagc
tttgtctgaaacagtcgttgtcactgttgagatacacggatatactggtggcggacagga
tcttctacgaagctggagcagctgcaaaggattatgggagtgaatacgaatcgcttgggt
tcttgcttttgaatcattatctggacttggtagatgcaattgaagaaggaaatggtgagc
tcgtggattatagtccatttgagaatagtgatattccgacagaggtgtcacttccaacaa
ggcaatggctagagagcgccaaacacgaggaaatgaaagaatgggttcttgcctcatcag
tcgatgatgctcacgcaaaagagctagtatatgataagcgaggagtcttcgaagcttccc
ttaaagataagagaggtacggccgaaccgtgtctagtaactggctatccggtcattgaga
gtacagttcgcattggaagtatggtcgccgaaaaggacaatttgaacaagtttctcgttg
tgatcaagtcaaatcagacggagaacctactgaatgtgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTGCCATGCGAACCGCGTTGGA 9 619 4661 Antisense
GTCGTTGTCACTGTTGAGATACACG 310 473 4734 Antisense
TGGCGGACAGGATCTTCTACGAAGC 213 545 4769 Antisense
TACGAATCGCTTGGGTTCTTGCTTT 128 649 4825 Antisense
GAGGTGTCACTTCCAACAAGGCAAT 199 403 4942 Antisense
AAGAATGGGTTCTTGCCTCATCAGT 60 153 4997 Antisense
ATCAGTCGATGATGCTCACGCAAAA 446 29 5016 Antisense
AGCGAGGAGTCTTCGAAGCTTCCCT 620 81 5057 Antisense
ACGGCCGAACCGTGTCTAGTAACTG 129 1 5098 Antisense
GTAACTGGCTATCCGGTCATTGAGA 255 461 5116 Antisense
GACGGAGAACCTACTGAATGTGCAA 700 375 5217 Antisense
Sequence Source Affymetrix Proprietary Database