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[193307_at] Lectin C-type domain short and long forms

Description Y38H6C.8 /REP_DB=WormBase Gene ID /WP=CE19102 /TR=Q9XX56 /GB=CAA20982.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 25      4grp_total > 07      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 42.7
(-0.1)
A 		4.7
(-3)
A 		8.9
(-2.7)
A 		84
(3)
A 		79
B 47
(1.5)
A 		10.8
(-3)
A 		37.2
(0.3)
A 		58.6
(3)
A 		48
C 60.6
(3)
A 		5.9
(-3)
A 		49.3
(1.8)
A 		35.7
(0.3)
A 		55
avr 50.1
(1.9) 		7.1
(-3) 		31.8
(-0.2) 		59.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 111.1
(1.3)
A 		151.9
(3)
P 		43.6
(-1.5)
A 		56.9
(-1)
A 		8.3
(-3)
A 		22
(-2.4)
A 		144
B 78.2
(1.4)
M 		106.4
(3)
P 		51
(-0.2)
A 		25.8
(-1.7)
A 		3.2
(-3)
A 		6.9
(-2.8)
A 		103
C 101.2
(1.3)
P 		137.5
(3)
P 		76.8
(0.2)
P 		5.6
(-3)
A 		6.7
(-2.9)
A 		6.8
(-2.9)
A 		132
avr 96.8
(1.3) 		131.9
(3) 		57.1
(-0.6) 		29.4
(-1.9) 		6.1
(-3) 		11.9
(-2.7) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15.5
(3)
A 		1
(-3)
A 		2.3
(-2.5)
A 		12.3
(1.7)
A 		15
B 15
(3)
A 		2.7
(-3)
A 		8.6
(-0.1)
A 		12.5
(1.8)
A 		12
C 20.1
(3)
A 		1.7
(-3)
A 		17.2
(2.1)
A 		6
(-1.6)
A 		18
avr 16.9
(3) 		1.8
(-3) 		9.4
(0) 		10.3
(0.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 20.5
(-0.9)
A 		54
(3)
P 		9.5
(-2.2)
A 		14.4
(-1.6)
A 		2.5
(-3)
A 		5.4
(-2.7)
A 		52
B 27.2
(1.6)
M 		35.4
(3)
P 		12.4
(-1)
A 		6.8
(-2)
A 		1.3
(-3)
A 		2.6
(-2.8)
A 		34
C 37.5
(2.4)
P 		41.9
(3)
P 		19.5
(-0.3)
P 		1.1
(-3)
A 		2.2
(-2.8)
A 		2.3
(-2.8)
A 		41
avr 28.4
(0.8) 		43.8
(3) 		13.8
(-1.3) 		7.4
(-2.2) 		2
(-3) 		3.4
(-2.8) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12901
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.8 NCBI
Target Description Y38H6C.8 /REP_DB=WormBase Gene ID /WP=CE19102 /TR=Q9XX56 /GB=CAA20982.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075550 NCBI Caenorhabditis elegans Y38H6C.8 (Y38H6C.8) mRNA, complete cds. 11/11 None
SNAP00000041320 ENSEMBL cdna:SNAP chromosome:CEL140:V:20512817:20513698:1 11/11 None
GENEFINDER00000041346 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20512817:20513698:1 11/11 None
Y38H6C.8 ENSEMBL cdna:known chromosome:CEL140:V:20512817:20513698:1 gene:Y38H6C.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20512816-20513698(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Ensembl Y38H6C.8
Entrez Gene 189689 Entrez gene
SwissProt Q9XX56 EMBL-EBI
WormBase CE19102 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20982 Hypothetical protein Y38H6C.8 [Caenorhabditis elegans] ref|NP_507951.1| Y38H6C.8 [Caenorhabditis elegans] 5.0E-96
blast AAC48150 Hypothetical protein C54D1.2 [Caenorhabditis elegans] ref|NP_509202.1| C54D1.2 [Caenorhabditis elegans] 2.0E-54
blast CAE65847 Hypothetical protein CBG10980 [Caenorhabditis briggsae] 1.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.4E-19
Sequence
Target Sequence 
>C. ELEGANS:193307_AT
gcttcgcttatttatcattgtctgtctagtgtgctctgtcgcgccggactgtgttccggg
agatgttggatttggagattcctgctactcgttcaaccgtgttcatggaaagttcaagga
tgccaacgatttgtgtgtaaagatgtttggagggagtctggtaaaaatcacgaatattat
cgataacaattggatgcaaaaactggcggtaaaccacctcgacgccgactacaactcttt
ttggatcggagccagcgacgctgcccactacaccaattggacttggattgacgggagccc
aatgcgattctccaattggggaccaggacagccacttgaagatcggcactgcggaactat
gctcatttcgactggaaagtggttttcccaagtgtgcgatgaaaggatccagtttctgtg
ccagtatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCGCTTATTTATCATTGTCTGT 244 307 15 Antisense
TCATTGTCTGTCTAGTGTGCTCTGT 539 619 29 Antisense
TCGCGCCGGACTGTGTTCCGGGAGA 75 599 53 Antisense
TTGGAGATTCCTGCTACTCGTTCAA 159 707 86 Antisense
TACTCGTTCAACCGTGTTCATGGAA 32 647 100 Antisense
ACGCCGACTACAACTCTTTTTGGAT 465 91 236 Antisense
TGACGGGAGCCCAATGCGATTCTCC 323 571 303 Antisense
GGACCAGGACAGCCACTTGAAGATC 127 523 334 Antisense
GATCGGCACTGCGGAACTATGCTCA 655 417 355 Antisense
GTGGTTTTCCCAAGTGTGCGATGAA 568 489 393 Antisense
GGATCCAGTTTCTGTGCCAGTATCC 20 513 419 Antisense
Sequence Source Affymetrix Proprietary Database