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[193306_at] chromo domain of heterochromatin protein

Description F32E10.2 /REP_DB=WormBase Gene ID /WP=CE04475 /TR=Q19972 /GB=AAA83357.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chromo domain of heterochromatin protein
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 96      6grp_total > 87      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 458.5
(-3)
P 		532.7
(-0)
P 		575.1
(1.7)
P 		607.3
(3)
P 		149
B 606.1
(3)
P 		599.1
(2.6)
P 		531.4
(-1.6)
P 		508.8
(-3)
P 		97
C 457.4
(-3)
P 		510.5
(-0.4)
P 		581.7
(3)
P 		566.4
(2.3)
P 		124
avr 507.3
(-3) 		547.4
(1.3) 		562.7
(3) 		560.8
(2.8) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 929
1 2 3 4 5 6 range
A 615.6
(-3)
P 		642.3
(-2.7)
P 		622.2
(-2.9)
P 		717.6
(-1.9)
P 		949.2
(0.6)
P 		1166.2
(3)
P 		551
B 664.6
(-1.9)
P 		530
(-3)
P 		794.6
(-0.9)
P 		728.9
(-1.4)
P 		942.2
(0.3)
P 		1273.9
(3)
P 		744
C 559.3
(-3)
P 		672.1
(-2.2)
P 		743.4
(-1.8)
P 		829.2
(-1.2)
P 		667.3
(-2.3)
P 		1458.7
(3)
P 		899
avr 613.2
(-3) 		614.8
(-3) 		720.1
(-2.1) 		758.6
(-1.7) 		852.9
(-0.9) 		1299.6
(3) 		686
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 166.9
(3)
P 		115.6
(-0.9)
P 		150.3
(1.7)
P 		88.9
(-3)
P 		78
B 193.3
(3)
P 		148
(-0.2)
P 		123.1
(-2)
P 		108.4
(-3)
P 		85
C 151.4
(0.1)
P 		146.8
(-0.1)
P 		202.7
(3)
P 		95.5
(-3)
P 		107
avr 170.5
(3) 		136.8
(0.2) 		158.7
(2) 		97.6
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 113.5
(-3)
P 		228.4
(1)
P 		135.5
(-2.2)
P 		182
(-0.6)
P 		286.4
(3)
P 		283.9
(2.9)
P 		173
B 231.3
(-1.9)
P 		176.4
(-3)
P 		193
(-2.7)
P 		193.1
(-2.7)
P 		382.8
(1.1)
P 		475
(3)
P 		299
C 207.3
(-2.2)
P 		205.1
(-2.3)
P 		189.2
(-2.6)
P 		166.8
(-3)
P 		215.9
(-2.1)
P 		488.3
(3)
P 		322
avr 184
(-2.7) 		203.3
(-2.2) 		172.6
(-3) 		180.6
(-2.8) 		295
(0) 		415.7
(3) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8861
Sequence Type Exemplar sequence
Representative Public ID F32E10.2 NCBI
Target Description F32E10.2 /REP_DB=WormBase Gene ID /WP=CE04475 /TR=Q19972 /GB=AAA83357.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chromo domain of heterochromatin protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068830(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068830 NCBI Caenorhabditis elegans F32E10.2 (F32E10.2) mRNA, complete cds. 11/11 None
SNAP00000038466 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7576171:7577151:1 11/11 None
GENEFINDER00000038480 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7576171:7577205:1 11/11 None
F32E10.2 ENSEMBL cdna:known chromosome:CEL140:IV:7576165:7577296:1 gene:F32E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7576176-7577157(+) 100.0 100.0
Public Domain and Genome References
Gene Title chromo domain of heterochromatin protein
Ensembl F32E10.2
Entrez Gene 177536 Entrez gene
SwissProt Q19972 EMBL-EBI
WormBase CE04475 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83357 Hypothetical protein F32E10.2 [Caenorhabditis elegans] ref|NP_501231.1| F32E10.2 [Caenorhabditis elegans] 1.0E-111
blast AAA83357 Hypothetical protein F32E10.2 [Caenorhabditis elegans] ref|NP_501231.1| F32E10.2 [Caenorhabditis elegans] 1.0E-106
blast CAE61920 Hypothetical protein CBG05916 [Caenorhabditis briggsae] 2.0E-31
blast CAE61921 Hypothetical protein CBG05917 [Caenorhabditis briggsae] 7.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000953 EMBL-EBI Chromo 1.3E-10
Sequence
Target Sequence 
>C. ELEGANS:193306_AT
gattctcttctgtcaacctacaaaaagaaggtaaccaagcaatctgatgatagcagcgga
gaatatgccgtggagcgtgtgttggctcatcgaaaggtgaaaggcagcccactttatcta
gttcaatggaaaggatacccgcatccagtgtggaactcggaaatgtgggaggaagatctt
gataactgcaaggatttgctagctgcttacaagaagcatcaagaggatctcaaaatcgct
caaactccgaagaagactccaagcaagacaccaaagaaaactccaaaatcgttgaaaaga
agagctctcactccatccgatgacgaagaagaggcgggaccgattgcgcctgagcctaaa
aagacaccaaaacaatctacaaagaagctgaagcgtaccacctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTCTTCTGTCAACCTACAAAA 632 431 208 Antisense
GCCGTGGAGCGTGTGTTGGCTCATC 298 283 274 Antisense
AAAGGCAGCCCACTTTATCTAGTTC 349 121 307 Antisense
GATACCCGCATCCAGTGTGGAACTC 149 425 341 Antisense
GCAAGGATTTGCTAGCTGCTTACAA 495 321 395 Antisense
GGATCTCAAAATCGCTCAAACTCCG 645 511 432 Antisense
GAAGACTCCAAGCAAGACACCAAAG 538 339 459 Antisense
GAAAAGAAGAGCTCTCACTCCATCC 80 355 501 Antisense
CTCTCACTCCATCCGATGACGAAGA 238 229 512 Antisense
ACCGATTGCGCCTGAGCCTAAAAAG 261 89 546 Antisense
AAAGAAGCTGAAGCGTACCACCTCC 662 121 588 Antisense
Sequence Source Affymetrix Proprietary Database