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[193305_at]

Description C56G3.1 /REP_DB=WormBase Gene ID /WP=CE04283 /TR=SW:Q18904 /GB=AAA80406.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptors (family 1)
Cluster 6grp_high1_10_10 > 18      4grp_high_8_8 > 34      6grp_total > 27      4grp_total > 45      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 317.6
(3)
P 		267.5
(0.7)
P 		195.9
(-2.6)
A 		187.8
(-3)
P 		130
B 372.5
(3)
P 		259.8
(-0.7)
P 		188.9
(-3)
P 		241
(-1.3)
P 		184
C 301.1
(3)
P 		246.1
(0.6)
P 		160.9
(-3)
P 		177.8
(-2.3)
P 		140
avr 330.4
(3) 		257.8
(0.1) 		181.9
(-3) 		202.2
(-2.2) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 304.8
(3)
P 		205.1
(-0.5)
P 		150.4
(-2.5)
P 		135.7
(-3)
A 		177
(-1.5)
A 		210.2
(-0.4)
P 		169
B 255.5
(3)
P 		227.6
(0.5)
P 		213.6
(-0.7)
P 		187.5
(-3)
P 		195.8
(-2.3)
P 		190.7
(-2.7)
P 		68
C 253.9
(3)
P 		218.1
(1.1)
P 		174.4
(-1.2)
A 		158.1
(-2)
A 		139.1
(-3)
A 		171.5
(-1.3)
P 		115
avr 271.4
(3) 		216.9
(0.1) 		179.5
(-2) 		160.4
(-3) 		170.6
(-2.4) 		190.8
(-1.4) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 115.6
(3)
P 		58.1
(-0.9)
P 		51.2
(-1.4)
A 		27.5
(-3)
P 		88
B 118.8
(3)
P 		64.2
(-1.4)
P 		43.8
(-3)
P 		51.4
(-2.4)
P 		75
C 99.7
(3)
P 		70.8
(0.5)
P 		56.1
(-0.8)
P 		30
(-3)
P 		70
avr 111.4
(3) 		64.4
(-0.8) 		50.4
(-1.9) 		36.3
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 56.2
(0.5)
P 		72.9
(3)
P 		32.8
(-3)
P 		34.4
(-2.8)
A 		53.4
(0.1)
A 		51.2
(-0.2)
P 		40
B 88.9
(3)
P 		75.7
(1)
P 		51.9
(-2.7)
P 		49.7
(-3)
P 		79.6
(1.6)
P 		71.1
(0.3)
P 		39
C 94.1
(3)
P 		66.5
(0.3)
P 		44.4
(-1.8)
A 		31.8
(-3)
A 		45
(-1.7)
A 		57.4
(-0.5)
P 		62
avr 79.7
(3) 		71.7
(1.8) 		43
(-2.4) 		38.6
(-3) 		59.3
(0) 		59.9
(0.1) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193305_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16975
Sequence Type Exemplar sequence
Representative Public ID C56G3.1 NCBI
Target Description C56G3.1 /REP_DB=WormBase Gene ID /WP=CE04283 /TR=SW:Q18904 /GB=AAA80406.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptors (family 1)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171723(11), NM_171724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171723 NCBI Caenorhabditis elegans C56G3.1b (C56G3.1) mRNA, complete cds. 11/11 None
NM_171724 NCBI Caenorhabditis elegans C56G3.1a (C56G3.1) mRNA, complete cds. 11/11 None
SNAP00000027703 ENSEMBL cdna:SNAP chromosome:CEL140:X:7387075:7388151:1 11/11 None
GENEFINDER00000027720 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7387450:7388151:1 9/11 None
C56G3.1b ENSEMBL cdna:known chromosome:CEL140:X:7377247:7388345:1 gene:C56G3.1 11/11 None
C56G3.1a ENSEMBL cdna:known chromosome:CEL140:X:7384458:7388151:1 gene:C56G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7385903-7388150(+) 100.0 100.0
Public Domain and Genome References
Ensembl C56G3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51505 Hypothetical protein C56G3.1b [Caenorhabditis elegans] ref|NP_741834.1| C56G3.1b [Caenorhabditis elegans] 0.0
blast AAA80406 Hypothetical protein C56G3.1a [Caenorhabditis elegans] ref|NP_741835.1| C56G3.1a [Caenorhabditis elegans] sp|Q18904|YYO1_CAEEL Probable G-protein coupled receptor C56G3.1 0.0
blast CAE65880 Hypothetical protein CBG11030 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.4E-31
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.6E-13
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.4E-31
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.6E-13
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.6E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741834.1 6 72-94,107-129,144-166,187-209,257-279,350-372
NP_741835.1 6 52-74,87-109,124-146,167-189,237-259,330-352
C56G3.1b 6 72-94,107-129,144-166,187-209,257-279,350-372
C56G3.1a 6 52-74,87-109,124-146,167-189,237-259,330-352
SNAP00000027703 2 29-51,122-144
Sequence
Target Sequence 
>C. ELEGANS:193305_AT
acagatccgatagccaccataattcgttgaaaaataacaacaaccacacgtcttctctac
gttcgccatcaatgccctcaatcagaagttcgataacggagagaaacaagacgaatcaga
gaacaaacagaactacttcgttactgattgcaatggccggaagctatgcggctctttggt
ttccattcactctcatcacttttttgatagacttcgagttgatcatcaatcaagactacg
tgaacttggtagaacgaattgaccaaacctgcaaaatggtatccatgctgtccatttgtg
tgaacccatttctctacggattcctaaataccaattttcgacacgaattttccgacatct
actaccgatacattcgctgtgaaacaaagagtcagccagccggccgattccatcatgatg
tatcatcaatcgctcaccatagacaagactctgtttacaatgatgaggcaacacttttga
ctacagggcgtcagagtaatggtaaagatgggagctcgtctccaataggattccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGATCCGATAGCCACCATAATTC 405 107 860 Antisense
ATCAATGCCCTCAATCAGAAGTTCG 112 27 927 Antisense
GGAAGCTATGCGGCTCTTTGGTTTC 395 531 1018 Antisense
CATTCACTCTCATCACTTTTTTGAT 93 217 1043 Antisense
GTATCCATGCTGTCCATTTGTGTGA 136 455 1138 Antisense
ATTTGTGTGAACCCATTTCTCTACG 690 17 1153 Antisense
CACGAATTTTCCGACATCTACTACC 698 199 1201 Antisense
ATCTACTACCGATACATTCGCTGTG 156 33 1216 Antisense
ATCATCAATCGCTCACCATAGACAA 95 31 1281 Antisense
GAGGCAACACTTTTGACTACAGGGC 390 405 1324 Antisense
GGAGCTCGTCTCCAATAGGATTCCG 384 521 1370 Antisense
Sequence Source Affymetrix Proprietary Database