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[193303_at] bacterial permeability-increasing protein

Description C06E8.5 /REP_DB=WormBase Gene ID /WP=CE00801 /TR=Q17738 /GB=AAA50642.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=bacterial permeability-increasing protein
Cluster 6grp_high1_10_10 > 91      4grp_high_8_8 > 55      6grp_total > 93      4grp_total > 48      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 733
1 2 3 4 range
A 116
(-3)
P 		483.2
(0.3)
P 		792.3
(3)
P 		163
(-2.6)
A 		676
B 123.2
(-3)
P 		632.1
(2.3)
P 		703.3
(3)
P 		179.8
(-2.4)
P 		580
C 174.4
(-2.9)
P 		465.8
(-0.4)
P 		849.2
(3)
P 		166.5
(-3)
P 		683
avr 137.9
(-3) 		527
(0.6) 		781.6
(3) 		169.8
(-2.7) 		644

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1079
1 2 3 4 5 6 range
A 106.5
(-3)
A 		615.1
(0.2)
P 		349
(-1.5)
P 		407.2
(-1.1)
P 		1070.2
(3)
P 		471.3
(-0.7)
P 		964
B 96.4
(-3)
M 		578.2
(-0.3)
P 		328.3
(-1.7)
P 		406.5
(-1.3)
P 		1175
(3)
P 		479.8
(-0.9)
P 		1079
C 103.1
(-3)
P 		491.1
(-0.5)
P 		373
(-1.3)
P 		396.7
(-1.1)
P 		1034.8
(3)
P 		485.7
(-0.5)
P 		932
avr 102
(-3) 		561.5
(-0.2) 		350.1
(-1.5) 		403.5
(-1.2) 		1093.3
(3) 		478.9
(-0.7) 		991
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 42.2
(-2.4)
P 		104.9
(-0.3)
P 		207.1
(3)
P 		23.9
(-3)
A 		183
B 39.3
(-3)
P 		156.1
(2.7)
P 		163
(3)
P 		38.3
(-3)
P 		125
C 57.7
(-2.3)
P 		133.9
(-0.6)
P 		296
(3)
P 		28.1
(-3)
P 		268
avr 46.4
(-2.5) 		131.6
(0.2) 		222
(3) 		30.1
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 19.6
(-3)
A 		218.8
(0.9)
P 		76
(-1.9)
P 		103.3
(-1.3)
P 		322.9
(3)
P 		114.8
(-1.1)
P 		303
B 33.5
(-3)
M 		192.5
(-0.9)
P 		79.7
(-2.4)
P 		107.7
(-2)
P 		477.4
(3)
P 		178.9
(-1)
P 		444
C 38.2
(-3)
P 		149.8
(-0.7)
P 		94.9
(-1.9)
P 		79.8
(-2.2)
P 		334.8
(3)
P 		162.6
(-0.5)
P 		297
avr 30.4
(-3) 		187
(-0.3) 		83.5
(-2.1) 		96.9
(-1.9) 		378.4
(3) 		152.1
(-0.9) 		348
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7330
Sequence Type Exemplar sequence
Representative Public ID C06E8.5 NCBI
Target Description C06E8.5 /REP_DB=WormBase Gene ID /WP=CE00801 /TR=Q17738 /GB=AAA50642.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=bacterial permeability-increasing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066129 NCBI Caenorhabditis elegans C06E8.5 (C06E8.5) mRNA, complete cds. 11/11 None
SNAP00000030991 ENSEMBL cdna:SNAP chromosome:CEL140:III:7002339:7005219:-1 11/11 None
GENEFINDER00000030993 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7002339:7005128:-1 11/11 None
C06E8.5 ENSEMBL cdna:known chromosome:CEL140:III:7002339:7005071:-1 gene:C06E8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7002336-7005069(-) 100.0 100.0
Public Domain and Genome References
Gene Title bacterial permeability-increasing protein
Ensembl C06E8.5
Entrez Gene 182336 Entrez gene
SwissProt Q17738 EMBL-EBI
WormBase CE00801 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50642 Hypothetical protein C06E8.5 [Caenorhabditis elegans] ref|NP_498530.1| C06E8.5 [Caenorhabditis elegans] 0.0
blast CAE70066 Hypothetical protein CBG16502 [Caenorhabditis briggsae] 0.0
blast NP_500850 C55C3.1 [Caenorhabditis elegans] gb|AAA96173.1| Hypothetical protein C55C3.1 [Caenorhabditis elegans] 2.0E-27
blast NP_500850 C55C3.1 [Caenorhabditis elegans] gb|AAA96173.1| Hypothetical protein C55C3.1 [Caenorhabditis elegans] 3.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 3.7E-18
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 3.7E-18
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 3.7E-18
Sequence
Target Sequence 
>C. ELEGANS:193303_AT
ggatgacaccacaatttggaccagttatgagaacaacttgtgatttgagtactggatcgc
ttttctgtattggtgatttgttcccagcattgagagaaatgcttccggatagaaatgttg
ctttccttttcaccacgttgcgagcacctgcggttattatgcaaccagaagaaaaaggtg
gaatccacttcagtcttcgtggtctaatccgtttggtctctgatagaaacgagccaattg
gagaaatggaaattcgaattgaggcacttatgaaaatgaagttgacatcaaaaagtgtta
agggaaaagttacaattgaagagattcaattcacatcccgttctccacgaatcttgctcc
aagaagaacttgatgatgctggttttctttctcgtgaaattcttcaaagaatggtcaatg
atattcttcgtcaaggaattccaattccaattcatccacttttcaaattagtcaaaccaa
aactgacacttttgtcacgttctatgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGACACCACAATTTGGACCAGT 3 515 1100 Antisense
GAGTACTGGATCGCTTTTCTGTATT 564 397 1146 Antisense
GTGATTTGTTCCCAGCATTGAGAGA 377 483 1172 Antisense
TGCGAGCACCTGCGGTTATTATGCA 402 581 1238 Antisense
GGAATCCACTTCAGTCTTCGTGGTC 448 531 1279 Antisense
TTCGTGGTCTAATCCGTTTGGTCTC 519 609 1295 Antisense
AGAGATTCAATTCACATCCCGTTCT 24 69 1419 Antisense
TTCTCCACGAATCTTGCTCCAAGAA 548 693 1440 Antisense
ATGCTGGTTTTCTTTCTCGTGAAAT 230 39 1475 Antisense
ATTCCAATTCCAATTCATCCACTTT 605 7 1537 Antisense
ACACTTTTGTCACGTTCTATGCTTC 341 111 1585 Antisense
Sequence Source Affymetrix Proprietary Database