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[193294_at] DNA repair protein RAD16 (yeast, weak)

Description C02B8.6 /REP_DB=WormBase Gene ID /WP=CE03895 /TR=SW:Q11096 /GB=AAA81439.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA repair protein RAD16 (yeast, weak)
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_high_8_8 > 16      6grp_highest_nonorm > 90      6grp_total > 91      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 127.9
(3)
P 		70.2
(-1.8)
A 		55.5
(-3)
P 		77.1
(-1.2)
P 		72
B 95.1
(3)
P 		69
(-1)
P 		55.5
(-3)
A 		86
(1.6)
P 		40
C 106.8
(3)
P 		50.3
(-3)
A 		75.9
(-0.3)
P 		84.8
(0.7)
P 		57
avr 109.9
(3) 		63.2
(-2.9) 		62.3
(-3) 		82.6
(-0.4) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 100.6
(0.9)
P 		99.2
(0.8)
P 		66.7
(-3)
P 		118.4
(3)
P 		92
(-0.1)
P 		76.6
(-1.9)
P 		52
B 73.8
(-1.5)
P 		105.2
(1.4)
P 		57.1
(-3)
P 		99.2
(0.9)
P 		122.6
(3)
P 		88.3
(-0.1)
P 		66
C 122.1
(3)
P 		100.1
(0.9)
P 		83.4
(-0.7)
P 		92.4
(0.2)
P 		82.7
(-0.7)
P 		58.5
(-3)
P 		64
avr 98.8
(2.2) 		101.5
(2.7) 		69.1
(-3) 		103.3
(3) 		99.1
(2.3) 		74.5
(-2.1) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 46.6
(3)
P 		15.2
(-2.3)
A 		14.5
(-2.5)
P 		11.3
(-3)
P 		35
B 30.3
(3)
P 		17
(-1.6)
P 		12.9
(-3)
A 		18.3
(-1.1)
P 		17
C 35.3
(3)
P 		14.5
(-2.9)
A 		26.5
(0.5)
P 		14.3
(-3)
P 		21
avr 37.4
(3) 		15.6
(-2.7) 		18
(-2.1) 		14.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 18.5
(-1.8)
P 		35.3
(3)
P 		14.5
(-3)
P 		30
(1.5)
P 		27.8
(0.8)
P 		18.6
(-1.8)
P 		21
B 25.7
(-1)
P 		35
(0.5)
P 		13.9
(-3)
P 		26.3
(-0.9)
P 		49.8
(3)
P 		32.9
(0.2)
P 		36
C 45.3
(3)
P 		30.5
(-0.3)
P 		21.2
(-2.4)
P 		18.6
(-3)
P 		26.8
(-1.2)
P 		19.6
(-2.8)
P 		27
avr 29.8
(1.4) 		33.6
(2.6) 		16.5
(-3) 		25
(-0.2) 		34.8
(3) 		23.7
(-0.6) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193294_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15995
Sequence Type Exemplar sequence
Representative Public ID C02B8.6 NCBI
Target Description C02B8.6 /REP_DB=WormBase Gene ID /WP=CE03895 /TR=SW:Q11096 /GB=AAA81439.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA repair protein RAD16 (yeast, weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076968 NCBI Caenorhabditis elegans C02B8.6 (C02B8.6) mRNA, complete cds. 11/11 None
GENEFINDER00000001652 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8133851:8136259:-1 11/11 None
C02B8.6 ENSEMBL cdna:known chromosome:CEL140:X:8133115:8136268:-1 gene:C02B8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001639 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8133849-8136258(-) 99.81 99.81
Public Domain and Genome References
Gene Title DNA repair protein RAD16 (yeast, weak)
Ensembl C02B8.6
Entrez Gene 181070 Entrez gene
SwissProt Q11096 EMBL-EBI
WormBase CE29656 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81439 Hypothetical protein C02B8.6 [Caenorhabditis elegans] ref|NP_509369.2| C02B8.6 [Caenorhabditis elegans] sp|Q11096|YWZ6_CAEEL Hypothetical RING finger protein C02B8.6 in chromosome X 0.0
blast T15375 hypothetical protein C02B8.6 - Caenorhabditis elegans 0.0
blast CAE64137 Hypothetical protein CBG08753 [Caenorhabditis briggsae] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.7E-9
Pfam IPR004170 EMBL-EBI WWE domain 7.8E-29
Sequence
Target Sequence 
>C. ELEGANS:193294_AT
gcgcattctgattttccttatacacttgggtattggggaaatcagtttccaccattctgg
aataatgctgcaagaaattggggagacgttcaacaagccgccaaccctgtattcgctgga
aataatcaatttctgggcaatacacaatataacgttttccctccagggcaaatgggcttg
ccacttccaacaacaaacataaaaatggatatcagagacgacgagcaaaatagtgtaggt
ggacagcagggaatgcaaactcccactgcaggcagtgatgttcctactgcagcccaatac
aacgttcaggcgaatttcaatgttgctcgagtcaaattcttttggctttacagcagcaga
ggagatggttggtggcgtttcgatcaacgttgcgagaaggatatcgaagacgagtttctg
gccaacaagccgaatatggaaatgtacctgttcggaaagccgtacatacttgatttcgtg
gcaatgcgacagtggcaaaagggcaatcttgatgcttggaggcaaataaagcgcgtgaca
tcttcggagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCATTCTGATTTTCCTTATACAC 468 287 442 Antisense
GGAAATCAGTTTCCACCATTCTGGA 50 527 478 Antisense
TACACAATATAACGTTTTCCCTCCA 422 641 582 Antisense
GGCAAATGGGCTTGCCACTTCCAAC 69 535 608 Antisense
TGCAAACTCCCACTGCAGGCAGTGA 700 575 695 Antisense
GGCAGTGATGTTCCTACTGCAGCCC 520 535 712 Antisense
CTACTGCAGCCCAATACAACGTTCA 474 225 725 Antisense
GGTGGCGTTTCGATCAACGTTGCGA 555 497 812 Antisense
CGAGTTTCTGGCCAACAAGCCGAAT 480 247 852 Antisense
GAAATGTACCTGTTCGGAAAGCCGT 21 361 880 Antisense
TAAAGCGCGTGACATCTTCGGAGTT 243 639 968 Antisense
Sequence Source Affymetrix Proprietary Database