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[193292_at]

Description C53C7.1 /REP_DB=WormBase Gene ID /WP=CE19767 /TR=Q9XXU4 /GB=CAA15513.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster 6grp_total > 13      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 211.9
(3)
P 		97.6
(-1.4)
A 		57.6
(-3)
A 		70.6
(-2.5)
A 		154
B 188.9
(3)
P 		94.3
(-0.4)
A 		20.5
(-3)
A 		103.4
(-0)
P 		168
C 156.8
(3)
P 		49.4
(-3)
A 		52.4
(-2.8)
A 		150.1
(2.6)
P 		107
avr 185.9
(3) 		80.4
(-1.4) 		43.5
(-3) 		108
(-0.3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 105.8
(3)
P 		70.7
(0.2)
A 		59.5
(-0.7)
A 		83.1
(1.2)
A 		30
(-3)
A 		54.8
(-1)
A 		76
B 118.3
(1.8)
P 		87.3
(-0.3)
P 		135.3
(3)
A 		100.4
(0.6)
A 		97.8
(0.4)
P 		48.1
(-3)
A 		87
C 69.1
(-1)
A 		130.1
(3)
P 		37.9
(-3)
A 		113.5
(1.9)
A 		69.1
(-1)
P 		47.5
(-2.4)
A 		92
avr 97.7
(2.8) 		96
(2.6) 		77.6
(0.4) 		99
(3) 		65.6
(-1.1) 		50.1
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 77.2
(3)
P 		21.2
(-2)
A 		15.1
(-2.6)
A 		10.3
(-3)
A 		67
B 60.2
(3)
P 		23.3
(-1)
A 		4.7
(-3)
A 		22
(-1.1)
P 		56
C 51.9
(3)
P 		14.2
(-3)
A 		18.3
(-2.3)
A 		25.3
(-1.2)
P 		38
avr 63.1
(3) 		19.6
(-2.2) 		12.7
(-3) 		19.2
(-2.2) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 19.5
(0.9)
P 		25.1
(3)
A 		13
(-1.5)
A 		21.1
(1.5)
A 		9
(-3)
A 		13.3
(-1.4)
A 		16
B 41.2
(3)
P 		29.1
(-0.1)
P 		32.9
(0.9)
A 		26.6
(-0.8)
A 		39.7
(2.6)
P 		17.9
(-3)
A 		23
C 25.6
(0.2)
A 		39.7
(3)
P 		9.6
(-3)
A 		22.8
(-0.4)
A 		22.4
(-0.4)
P 		15.9
(-1.7)
A 		30
avr 28.8
(2) 		31.3
(3) 		18.5
(-1.9) 		23.5
(0) 		23.7
(0.1) 		15.7
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17399
Sequence Type Exemplar sequence
Representative Public ID C53C7.1 NCBI
Target Description C53C7.1 /REP_DB=WormBase Gene ID /WP=CE19767 /TR=Q9XXU4 /GB=CAA15513.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=7 transmembrane receptor (rhodopsin family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029316(11), NM_001029317(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029316 NCBI Caenorhabditis elegans C53C7.1a (C53C7.1) mRNA, complete cds. 11/11 None
NM_001029317 NCBI Caenorhabditis elegans C53C7.1b (C53C7.1) mRNA, complete cds. 10/11 None
SNAP00000019813 ENSEMBL cdna:SNAP chromosome:CEL140:X:13018800:13020977:-1 10/11 None
GENEFINDER00000019816 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13018800:13021943:-1 11/11 None
C53C7.1a ENSEMBL cdna:known chromosome:CEL140:X:13018800:13021943:-1 gene:C53C7.1 11/11 None
C53C7.1b ENSEMBL cdna:known chromosome:CEL140:X:13018800:13021943:-1 gene:C53C7.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13018799-13021943(-) 100.0 100.0
Public Domain and Genome References
Ensembl C53C7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15513 Hypothetical protein C53C7.1a [Caenorhabditis elegans] ref|NP_001024487.1| C53C7.1a [Caenorhabditis elegans] 0.0
blast CAH04724 Hypothetical protein C53C7.1b [Caenorhabditis elegans] ref|NP_001024488.1| C53C7.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.9E-54
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.3E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024487.1 7 28-50,66-88,103-125,146-163,191-213,250-272,287-309
NP_001024488.1 7 28-50,66-88,103-125,146-163,191-213,250-272,287-309
C53C7.1a 7 28-50,66-88,103-125,146-163,191-213,250-272,287-309
C53C7.1b 7 28-50,66-88,103-125,146-163,191-213,250-272,287-309
SNAP00000019813 6 16-38,53-75,96-113,141-163,200-222,237-259
GENEFINDER00000019816 7 28-50,66-88,103-125,146-163,191-213,250-272,287-309
Sequence
Target Sequence 
>C. ELEGANS:193292_AT
attcgtgtttccattgatcaccatcacattttgctatgcatctatttctatcaaactacg
acgtggtgtctttgtgagaggaagccaaaaagagctgatgtctgaggcacgtcgtcaatt
gacgcaacgtcgacttcgcacaaatcggatgcttattatcatgacagtcacattcgctct
ctcatggctgccatctgttggcttcaactttctccgggattactcagcgcttcccggcat
tattgattcacaagattacctattcggaattattttccattgcatttcaatgacatcggt
gattgtgaatcccttcctttacggttactgtaatgaacactttcgtgctgcatttgcggc
tcttcttgacacggtgaaggcagcttgtggaatgagacgagtgagtccgggcaatccagc
gtgctcccagctactcagtactcactttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGTGTTTCCATTGATCACCATC 624 9 612 Antisense
GATCACCATCACATTTTGCTATGCA 48 421 627 Antisense
AGAGCTGATGTCTGAGGCACGTCGT 504 69 702 Antisense
ATTGACGCAACGTCGACTTCGCACA 144 5 729 Antisense
TCATGGCTGCCATCTGTTGGCTTCA 204 623 793 Antisense
CCGGGATTACTCAGCGCTTCCCGGC 600 61 825 Antisense
GCTTCCCGGCATTATTGATTCACAA 130 307 840 Antisense
ATCGGTGATTGTGAATCCCTTCCTT 5 35 906 Antisense
GAACACTTTCGTGCTGCATTTGCGG 98 353 946 Antisense
TGAGACGAGTGAGTCCGGGCAATCC 355 569 1004 Antisense
CCAGCTACTCAGTACTCACTTTGAA 416 273 1038 Antisense
Sequence Source Affymetrix Proprietary Database