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[193291_at] Lectin C-type domain short and long forms

Description Y102A5B.3 /REP_DB=WormBase Gene ID /WP=CE19286 /TR=Q9XXJ6 /GB=CAA19437.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 12      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 46      6grp_highest_sub > 02      6grp_cgc > 71      6grp_high1_sub > De      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 376.5
(3)
P 		303.9
(-0.1)
P 		238
(-3)
P 		275
(-1.4)
P 		139
B 359.3
(3)
P 		239.4
(-0.8)
P 		168.5
(-3)
P 		199.7
(-2)
P 		191
C 430.6
(3)
P 		294.9
(-1.3)
P 		283.8
(-1.7)
P 		243.4
(-3)
P 		187
avr 388.8
(3) 		279.4
(-1.1) 		230.1
(-3) 		239.4
(-2.6) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 331.4
(1)
P 		435.4
(3)
P 		317.1
(0.7)
P 		273.1
(-0.1)
P 		128.4
(-2.9)
P 		125.7
(-3)
P 		310
B 219.2
(-0.3)
P 		355.8
(3)
P 		277.5
(1.1)
P 		230.7
(-0)
P 		126.2
(-2.6)
P 		109.1
(-3)
P 		247
C 389.2
(3)
P 		346.4
(2.1)
P 		385.8
(2.9)
P 		261.3
(0.2)
P 		123.8
(-2.9)
P 		117.4
(-3)
P 		272
avr 313.3
(1.5) 		379.2
(3) 		326.8
(1.8) 		255
(0.2) 		126.1
(-2.8) 		117.4
(-3) 		262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 137.1
(3)
P 		66
(-1.4)
P 		62.2
(-1.6)
P 		40.3
(-3)
P 		97
B 114.6
(3)
P 		59.1
(-1.4)
P 		39
(-3)
P 		42.6
(-2.7)
P 		76
C 142.5
(3)
P 		84.8
(-0.4)
P 		98.9
(0.4)
P 		41
(-3)
P 		102
avr 131.4
(3) 		70
(-1.1) 		66.7
(-1.3) 		41.3
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 61.1
(-1.5)
P 		154.8
(3)
P 		69.1
(-1.1)
P 		69.3
(-1.1)
P 		38.7
(-2.6)
P 		30.6
(-3)
P 		124
B 76.3
(-0.3)
P 		118.4
(3)
P 		67.4
(-0.9)
P 		61.1
(-1.4)
P 		51.3
(-2.2)
P 		40.7
(-3)
P 		78
C 144.2
(3)
P 		105.7
(0.8)
P 		98.2
(0.4)
P 		52.5
(-2.2)
P 		40.1
(-3)
P 		39.3
(-3)
P 		105
avr 93.9
(0.8) 		126.3
(3) 		78.2
(-0.2) 		61
(-1.4) 		43.4
(-2.6) 		36.9
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14728
Sequence Type Exemplar sequence
Representative Public ID Y102A5B.3 NCBI
Target Description Y102A5B.3 /REP_DB=WormBase Gene ID /WP=CE19286 /TR=Q9XXJ6 /GB=CAA19437.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074854(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074854 NCBI Caenorhabditis elegans C-type LECtin family member (clec-37) (clec-37) mRNA, complete cds. 10/11 None
SNAP00000036914 ENSEMBL cdna:SNAP chromosome:CEL140:V:16853010:16856634:-1 10/11 None
GENEFINDER00000036915 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16853010:16856642:-1 11/11 None
Y102A5B.3 ENSEMBL cdna:known chromosome:CEL140:V:16853010:16854660:-1 gene:Y102A5B.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16853009-16854660(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Gene Symbol clec-37
Ensembl Y102A5B.3
Entrez Gene 190828 Entrez gene
SwissProt Q9XXJ6 EMBL-EBI
WormBase CE35642 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19437 Hypothetical protein Y102A5B.3 [Caenorhabditis elegans] ref|NP_507255.2| C-type LECtin family member (clec-37) [Caenorhabditis elegans] 0.0
blast CAA19438 Hypothetical protein Y102A5B.2 [Caenorhabditis elegans] ref|NP_507256.2| C-type LECtin family member (clec-35) [Caenorhabditis elegans] 0.0
blast CAA19437 Hypothetical protein Y102A5B.3 [Caenorhabditis elegans] ref|NP_507255.2| C-type LECtin family member (clec-37) [Caenorhabditis elegans] 1.0E-129
blast CAA19437 Hypothetical protein Y102A5B.3 [Caenorhabditis elegans] ref|NP_507255.2| C-type LECtin family member (clec-37) [Caenorhabditis elegans] 1.0E-125
blast CAI94505 Hypothetical protein T20B3.16 [Caenorhabditis elegans] ref|NP_001024150.1| C-type LECtin family member (clec-36) [Caenorhabditis elegans] 1.0E-108
blast CAE17834 Hypothetical protein F49A5.9 [Caenorhabditis elegans] ref|NP_001023952.1| C-type LECtin family member (clec-32) [Caenorhabditis elegans] 1.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.1E-6
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-10
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507255.2 1 21-43
Y102A5B.3 1 21-43
SNAP00000036914 1 12-34
GENEFINDER00000036915 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:193291_AT
atgggcacactatttccacgtgtatttgggatatagtgagtggatccgcggagagctatg
ataactttgcaagcggttatcccaacgtgagcactgcttcgtgtggttacttcatcacca
ctggaaaggaagctggacaatggaaaactggcttgtgcaatcagcaaaatagtatcttat
gtgaattacctccaactatttatggtaagaactcaaagcaacagtgggcggcgattgcag
ttgggcaatccgaaaacaaaaattgcgaaaaaaattttaacaatcattgttacacacgct
ttgatgatgcctacaccgtcgctgaagcacatgaattttgcaagccgatgtgcgccgaag
ttgtgtcaatcaattctggcgatgaaagtcgctacgtacaatccatttacaatgtgaagg
aacatattatacttggcgtagcggttttaaacgacaataatatttattggctggacggat
catccacggtgttcataaacattgggaacaatgacaatggaacttgtgcgatcatggatg
tctcatttggtatgggttactggaccactatcgaatgttccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCACACTATTTCCACGTGTAT 184 51 491 Antisense
ACTTTGCAAGCGGTTATCCCAACGT 311 99 554 Antisense
TCCCAACGTGAGCACTGCTTCGTGT 670 591 570 Antisense
TGCTTCGTGTGGTTACTTCATCACC 696 577 585 Antisense
AACAGTGGGCGGCGATTGCAGTTGG 124 137 710 Antisense
ACACGCTTTGATGATGCCTACACCG 490 109 784 Antisense
CCTACACCGTCGCTGAAGCACATGA 656 267 800 Antisense
AGCCGATGTGCGCCGAAGTTGTGTC 617 83 833 Antisense
GAAAGTCGCTACGTACAATCCATTT 117 361 874 Antisense
GACGGATCATCCACGGTGTTCATAA 284 377 964 Antisense
ACTGGACCACTATCGAATGTTCCCA 28 97 1049 Antisense
Sequence Source Affymetrix Proprietary Database