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[193290_at] Lectin C-type domain short and long forms

Description Y102A5B.2 /REP_DB=WormBase Gene ID /WP=CE20379 /TR=Q9XXJ5 /GB=CAA19438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 02      4grp_total > 05      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 69.5
(0.8)
A 		15.9
(-2.9)
A 		13.9
(-3)
A 		101.7
(3)
A 		88
B 17.5
(-2.3)
A 		11.8
(-2.8)
A 		9.2
(-3)
A 		84
(3)
A 		75
C 58.5
(1.2)
A 		39.6
(-3)
A 		56.4
(0.8)
A 		66.4
(3)
A 		27
avr 48.5
(-0.5) 		22.4
(-3) 		26.5
(-2.6) 		84
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 29.9
(0.4)
A 		7
(-3)
A 		9.9
(-2.6)
A 		47.8
(3)
A 		7.3
(-3)
A 		7.7
(-2.9)
A 		41
B 35.2
(2.9)
A 		35.6
(3)
A 		9.6
(-3)
A 		19.2
(-0.8)
A 		34.1
(2.7)
A 		19.5
(-0.7)
A 		26
C 8.3
(-2.4)
A 		60.3
(3)
A 		2.6
(-3)
A 		7.4
(-2.5)
A 		49.2
(1.8)
A 		27.5
(-0.4)
A 		58
avr 24.5
(0.8) 		34.3
(3) 		7.4
(-3) 		24.8
(0.9) 		30.2
(2.1) 		18.2
(-0.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 25.3
(3)
A 		3.4
(-3)
A 		3.6
(-2.9)
A 		14.9
(0.2)
A 		22
B 5.6
(-1.7)
A 		2.9
(-2.7)
A 		2.1
(-3)
A 		17.9
(3)
A 		16
C 19.4
(2.8)
A 		11.4
(-2.9)
A 		19.7
(3)
A 		11.2
(-3)
A 		9
avr 16.8
(3) 		5.9
(-3) 		8.5
(-1.6) 		14.7
(1.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.5
(-0.9)
A 		2.5
(-2.6)
A 		2.2
(-2.8)
A 		12.1
(3)
A 		2.2
(-2.8)
A 		1.9
(-3)
A 		10
B 12.3
(2.2)
A 		11.9
(2)
A 		2.3
(-3)
A 		5.1
(-1.5)
A 		13.8
(3)
A 		7.3
(-0.4)
A 		12
C 3.1
(-2.2)
A 		18.4
(3)
A 		0.7
(-3)
A 		1.5
(-2.7)
A 		15.9
(2.2)
A 		9.2
(-0.1)
A 		18
avr 7
(0.5) 		10.9
(3) 		1.7
(-3) 		6.2
(-0.1) 		10.6
(2.8) 		6.1
(-0.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12800
Sequence Type Exemplar sequence
Representative Public ID Y102A5B.2 NCBI
Target Description Y102A5B.2 /REP_DB=WormBase Gene ID /WP=CE20379 /TR=Q9XXJ5 /GB=CAA19438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074855(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074855 NCBI Caenorhabditis elegans C-type LECtin family member (clec-35) (clec-35) mRNA, complete cds. 11/11 None
SNAP00000036914 ENSEMBL cdna:SNAP chromosome:CEL140:V:16853010:16856634:-1 11/11 None
GENEFINDER00000036915 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16853010:16856642:-1 11/11 None
Y102A5B.2 ENSEMBL cdna:known chromosome:CEL140:V:16854872:16856634:-1 gene:Y102A5B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16854871-16856634(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Gene Symbol clec-35
Ensembl Y102A5B.2
Entrez Gene 190827 Entrez gene
SwissProt Q9XXJ5 EMBL-EBI
WormBase CE35641 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19438 Hypothetical protein Y102A5B.2 [Caenorhabditis elegans] ref|NP_507256.2| C-type LECtin family member (clec-35) [Caenorhabditis elegans] 0.0
blast CAA19437 Hypothetical protein Y102A5B.3 [Caenorhabditis elegans] ref|NP_507255.2| C-type LECtin family member (clec-37) [Caenorhabditis elegans] 1.0E-129
blast CAA19437 Hypothetical protein Y102A5B.3 [Caenorhabditis elegans] ref|NP_507255.2| C-type LECtin family member (clec-37) [Caenorhabditis elegans] 1.0E-125
blast CAB04419 Hypothetical protein F49A5.7 [Caenorhabditis elegans] ref|NP_507262.2| C-type LECtin family member (clec-33) [Caenorhabditis elegans] 1.0E-103
blast CAB04826 Hypothetical protein T25E12.8 [Caenorhabditis elegans] ref|NP_507234.1| C-type LECtin family member (clec-34) [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-10
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-10
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507256.2 1 12-34
Y102A5B.2 1 12-34
SNAP00000036914 1 12-34
GENEFINDER00000036915 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:193290_AT
aacactagttcatcgtgcacgtgggatatgaagagtgggtctgcggcggactacgataac
tttgccaacggctttcccaacgagaccaatacaagctgtgtgtactttatcaccagtggg
ccagatgctggacagtggaaaagtggctcatgcaatcagacaatgggttttatgtgtgaa
ctacctccaactattcatgacggtagttgtgattacaattacaacaatcaatgttaccta
cgctacaatactccgcacaacattcctgatgctcaagaaatctgtaaaacaagatgtgcc
aaccttgtttcaatcagctcggccaatgaaaatcgcttcatacgatcactatttactaca
caaggatatgttttacttggcgctgcggttatatactacgacgatatttattggctggat
ggatcaccagcggtgtataattatattgaacggtatcaacacggagcttgtctgctgctg
aatgtgaattgggtttacatcactgacggtgcctggtacaccgaaagatgcaccactcca
ggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTAGTTCATCGTGCACGTGGG 210 135 430 Antisense
GGTCTGCGGCGGACTACGATAACTT 389 493 467 Antisense
GATAACTTTGCCAACGGCTTTCCCA 477 423 484 Antisense
GTGTGTACTTTATCACCAGTGGGCC 626 487 527 Antisense
ATGTTACCTACGCTACAATACTCCG 636 45 660 Antisense
TCCGCACAACATTCCTGATGCTCAA 145 597 681 Antisense
AGGATATGTTTTACTTGGCGCTGCG 524 55 792 Antisense
GGCGCTGCGGTTATATACTACGACG 346 539 808 Antisense
TCAACACGGAGCTTGTCTGCTGCTG 92 631 885 Antisense
TACATCACTGACGGTGCCTGGTACA 184 641 925 Antisense
ACCGAAAGATGCACCACTCCAGGAA 646 89 949 Antisense
Sequence Source Affymetrix Proprietary Database