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[193289_at] Leucine Rich Repeat (2 copies) (2 domains)

Description F33H2.3 /REP_DB=WormBase Gene ID /WP=CE17766 /TR=O62220 /GB=CAB04265.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (2 domains)
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 03      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 10      6grp_total > 35      4grp_total > 53      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1607
1 2 3 4 range
A 2408.9
(3)
P 		1507
(-0.5)
P 		1713.4
(0.3)
P 		855.8
(-3)
P 		1553
B 2362.8
(3)
P 		1917.7
(1.2)
P 		1669.4
(0.2)
P 		875.3
(-3)
P 		1488
C 2179.9
(3)
P 		1901.9
(1.8)
P 		1654.1
(0.7)
P 		802.4
(-3)
P 		1378
avr 2317.2
(3) 		1775.5
(0.8) 		1679
(0.4) 		844.5
(-3) 		1473

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 994
1 2 3 4 5 6 range
A 1477.8
(2)
P 		1573.1
(3)
P 		1298.3
(0)
P 		1180
(-1.2)
P 		1016.6
(-3)
P 		1150
(-1.6)
P 		557
B 1839.2
(3)
P 		1477.5
(-0)
P 		1246.2
(-1.9)
P 		1134.9
(-2.9)
P 		1120
(-3)
P 		1270.4
(-1.7)
P 		719
C 1715.2
(3)
P 		1421.5
(1)
P 		1512.5
(1.6)
P 		1137.7
(-1)
P 		845
(-3)
P 		1228.2
(-0.4)
P 		870
avr 1677.4
(3) 		1490.7
(1.4) 		1352.3
(0.1) 		1150.9
(-1.6) 		993.9
(-3) 		1216.2
(-1) 		684
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 752
1 2 3 4 range
A 877.1
(3)
P 		327.1
(-1.4)
P 		447.9
(-0.4)
P 		125.3
(-3)
P 		752
B 753.5
(3)
P 		473.6
(0)
P 		386.8
(-0.9)
P 		186.5
(-3)
P 		567
C 721.6
(3)
P 		546.8
(1.2)
P 		576.5
(1.5)
P 		135.3
(-3)
P 		586
avr 784.1
(3) 		449.2
(-0.2) 		470.4
(0) 		149
(-3) 		635

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 272.4
(-3)
P 		559.5
(3)
P 		282.7
(-2.8)
P 		299.3
(-2.4)
P 		306.8
(-2.3)
P 		280
(-2.8)
P 		287
B 640
(3)
P 		491.8
(0.4)
P 		302.6
(-3)
P 		300.6
(-3)
P 		455
(-0.3)
P 		473.7
(0.1)
P 		339
C 635.7
(3)
P 		433.7
(0)
P 		384.9
(-0.7)
P 		228.8
(-3)
P 		273.4
(-2.3)
P 		411.1
(-0.3)
P 		407
avr 516
(3) 		495
(2.5) 		323.4
(-1.8) 		276.2
(-3) 		345.1
(-1.3) 		388.3
(-0.2) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.799
Sequence Type Exemplar sequence
Representative Public ID F33H2.3 NCBI
Target Description F33H2.3 /REP_DB=WormBase Gene ID /WP=CE17766 /TR=O62220 /GB=CAB04265.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Leucine Rich Repeat (2 copies) (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061221 NCBI Caenorhabditis elegans F33H2.3 (F33H2.3) mRNA, complete cds. 11/11 None
SNAP00000009482 ENSEMBL cdna:SNAP chromosome:CEL140:I:15042650:15043394:1 11/11 None
GENEFINDER00000009487 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:15042650:15043394:1 11/11 None
F33H2.3.2 ENSEMBL cdna:known chromosome:CEL140:I:15042630:15043565:1 gene:F33H2.3 11/11 None
F33H2.3.1 ENSEMBL cdna:known chromosome:CEL140:I:15042633:15043570:1 gene:F33H2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15042580-15043325(+) 100.0 100.0
Public Domain and Genome References
Gene Title Leucine Rich Repeat (2 copies) (2 domains)
Ensembl F33H2.3
Entrez Gene 173372 Entrez gene
SwissProt O62220 EMBL-EBI
WormBase CE17766 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252174_AT leucine-rich repeat family protein at
CANINE:1588869_AT similar to acidic (leucine-rich) nuclear phosphoprotein 32 family, member E cfa
CANINE_2:CFA.1632.1.S1_AT similar to acidic (leucine-rich) nuclear phosphoprotein 32 family, member E cfa
CANINE_2:CFAAFFX.18265.1.S1_AT similar to acidic (leucine-rich) nuclear phosphoprotein 32 family, member E cfa
CHICKEN:GGAAFFX.12601.1.S1_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E gga
CHICKEN:GGAAFFX.21210.1.S1_S_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E gga
HG-U95AV2:40347_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U133A:208103_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U133_PLUS_2:208103_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U133A_2:208103_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HU35KSUBB:RC_AA069569_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HU35KSUBB:RC_AA130596_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
U133_X3P:G13569878_3P_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
U133_X3P:HS.71331.0.A2_3P_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U133A_2:221505_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U133_PLUS_2:221505_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U133A:221505_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U95AV2:40348_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U95B:58341_I_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U95B:58343_R_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U133_PLUS_2:229128_S_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U133B:229128_S_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
HG-U95E:91820_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
U133_X3P:HS.71331.1.A1_3P_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E hs
MOE430A:1451356_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MOUSE430_2:1451356_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MOUSE430A_2:1451356_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MOUSE430_2:1420592_A_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MOUSE430A_2:1420592_A_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MOE430A:1420592_A_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MU11KSUBB:MSA.16751.0_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MU11KSUBB:MSA.23918.0_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MG-U74AV2:97345_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MG-U74AV2:97556_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E mm
MU19KSUBA:TC15936_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E, mRNA (cDNA clone MGC:11640 IMAGE:3596597) mm
MU19KSUBA:TC15936_G_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E, mRNA (cDNA clone MGC:11640 IMAGE:3596597) mm
MU19KSUBB:TC33791_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E, mRNA (cDNA clone MGC:11640 IMAGE:3596597) mm
MU19KSUBC:TC36827_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E, mRNA (cDNA clone MGC:11640 IMAGE:3596597) mm
RG-U34B:RC_AI008642_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (predicted) rn
RG-U34C:RC_AI111998_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (predicted) rn
RAE230A:1372620_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (predicted) rn
RAT230_2:1372620_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (predicted) rn
RG-U34B:RC_AA850735_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB04265 Hypothetical protein F33H2.3 [Caenorhabditis elegans] ref|NP_493622.1| F33H2.3 [Caenorhabditis elegans] 1.0E-104
blast CAE72550 Hypothetical protein CBG19734 [Caenorhabditis briggsae] 3.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.098
Sequence
Target Sequence 
>C. ELEGANS:193289_AT
ctctattcctcgacaacgctgaagatggacaaatcggaggactcaccgaccagcttatca
acttggagatgctcagcatggtgaagtgcggactcaccacactcgccgggttcccaactc
ttccagctcttacctatttggatatcagtgacaatcagcttggagacaacgcttcgtttg
atgttcttgtgaaaaatgctccagatcttaagaagatcacactcgccagcaacaagctct
ctttggataatctccggtgcttaaaggttcttccaaatcttttcgagctcgacttgtcga
ataatccaagtctcggactcctcgaggactatcgtgagaagatgttcgagatgattccat
cgctgaagattcttgatggatgcgatgttgatggagaggaagttgaggaggagtttgccg
gtgagggaggagaagacagcgaggagggaagcggcgatgaagatggacccggactcagct
atctcgagaagagccagttctccgacgacgagactgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTATTCCTCGACAACGCTGAAGA 482 229 77 Antisense
CTCACCGACCAGCTTATCAACTTGG 665 227 118 Antisense
GGTGAAGTGCGGACTCACCACACTC 7 501 156 Antisense
CTCTTCCAGCTCTTACCTATTTGGA 607 229 194 Antisense
CAACGCTTCGTTTGATGTTCTTGTG 106 187 243 Antisense
TTAAGAAGATCACACTCGCCAGCAA 182 683 284 Antisense
GCTCTCTTTGGATAATCTCCGGTGC 384 299 312 Antisense
TCTCCGGTGCTTAAAGGTTCTTCCA 522 609 327 Antisense
TAATCCAAGTCTCGGACTCCTCGAG 201 635 378 Antisense
CCCGGACTCAGCTATCTCGAGAAGA 169 259 544 Antisense
CCAGTTCTCCGACGACGAGACTGAC 242 273 570 Antisense
Sequence Source Affymetrix Proprietary Database