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[193288_s_at]

Description H16D19.2 /REP_DB=WormBase Gene ID /WP=CE13383 /TR=O02302 /GB=CAA20941.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 30      4grp_total > 47      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 410
1 2 3 4 range
A 418.2
(3)
P 		32.2
(-3)
A 		35.1
(-3)
A 		76.1
(-2.3)
A 		386
B 349.6
(3)
P 		92.2
(-1.5)
A 		39.6
(-2.5)
A 		8.7
(-3)
A 		341
C 352.7
(3)
P 		96.4
(-1.9)
A 		38.2
(-3)
A 		106
(-1.7)
A 		315
avr 373.5
(3) 		73.6
(-2.4) 		37.6
(-3) 		63.6
(-2.5) 		336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 71.6
(-3)
A 		191.3
(1)
P 		249.2
(3)
P 		199.9
(1.3)
P 		143.4
(-0.6)
A 		101.9
(-2)
A 		178
B 127.4
(-0.8)
P 		202.2
(3)
P 		182
(2)
P 		163.2
(1)
P 		108.2
(-1.8)
A 		83.7
(-3)
A 		119
C 130.8
(-0.5)
A 		221
(2.6)
P 		231.3
(3)
P 		188
(1.5)
P 		99
(-1.6)
A 		57
(-3)
A 		174
avr 109.9
(-1.8) 		204.8
(2.3) 		220.8
(3) 		183.7
(1.4) 		116.9
(-1.5) 		80.9
(-3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 152.3
(3)
P 		7
(-3)
A 		9.2
(-2.9)
A 		11.1
(-2.8)
A 		145
B 111.5
(3)
P 		22.8
(-1.9)
A 		9.2
(-2.6)
A 		1.8
(-3)
A 		110
C 116.8
(3)
P 		27.7
(-2.2)
A 		13.3
(-3)
A 		17.9
(-2.7)
A 		104
avr 126.9
(3) 		19.2
(-2.5) 		10.6
(-3) 		10.3
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 13.2
(-3)
A 		68
(3)
P 		54.3
(1.5)
P 		50.7
(1.1)
P 		43.3
(0.3)
A 		24.8
(-1.7)
A 		55
B 44.3
(-0.8)
P 		67.3
(3)
P 		44.2
(-0.8)
P 		43.2
(-1)
P 		44
(-0.9)
A 		31.2
(-3)
A 		36
C 48.5
(0.7)
A 		67.4
(3)
P 		58.9
(1.9)
P 		37.8
(-0.7)
P 		32
(-1.4)
A 		19.1
(-3)
A 		48
avr 35.3
(-1.5) 		67.6
(3) 		52.5
(0.9) 		43.9
(-0.3) 		39.8
(-0.9) 		25
(-3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193288_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.874
Sequence Type Exemplar sequence
Representative Public ID H16D19.2 NCBI
Target Description H16D19.2 /REP_DB=WormBase Gene ID /WP=CE13383 /TR=O02302 /GB=CAA20941.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000024108 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12637314:12640557:-1 11/11 None
SNAP00000024093 ENSEMBL cdna:SNAP chromosome:CEL140:I:12637624:12638936:-1 11/11 None
GENEFINDER00000037464 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12643293:12646655:1 11/11 None
SNAP00000037460 ENSEMBL cdna:SNAP chromosome:CEL140:I:12645033:12646345:1 11/11 None
T07D10.5 ENSEMBL cdna:known chromosome:CEL140:I:12637624:12638936:-1 gene:T07D10.5 11/11 None
H16D19.2 ENSEMBL cdna:known chromosome:CEL140:I:12645033:12646345:1 gene:H16D19.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12644963-12646276(+) 100.0 100.0
chrI:12637554-12638867(-) 100.0 100.0
Public Domain and Genome References
Ensembl T07D10.5
H16D19.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20940 Hypothetical protein H16D19.1 [Caenorhabditis elegans] emb|CAB04713.1| Hypothetical protein T07D10.4 [Caenorhabditis elegans] ref|NP_493197.1| C-type LECtin family member (clec-13) [Caenorhabditis elegans] ref|NP_493196.1| C-type LECtin family member (clec-15) [Caenorhabditis elegans] 0.0
blast T23099 hypothetical protein H16D19.2 - Caenorhabditis elegans 0.0
blast CAA20940 Hypothetical protein H16D19.1 [Caenorhabditis elegans] emb|CAB04713.1| Hypothetical protein T07D10.4 [Caenorhabditis elegans] ref|NP_493197.1| C-type LECtin family member (clec-13) [Caenorhabditis elegans] ref|NP_493196.1| C-type LECtin family member (clec-15) [Caenorhabditis elegans] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.5E-6
Pfam IPR001304 EMBL-EBI C-type lectin 1.1E-7
Pfam IPR001304 EMBL-EBI C-type lectin 8.6E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-9
Pfam IPR000859 EMBL-EBI CUB 8.6E-19
Pfam IPR001304 EMBL-EBI C-type lectin 8.6E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-9
Pfam IPR001304 EMBL-EBI C-type lectin 1.5E-6
Pfam IPR001304 EMBL-EBI C-type lectin 1.1E-7
Pfam IPR001304 EMBL-EBI C-type lectin 8.6E-11
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-9
Pfam IPR000859 EMBL-EBI CUB 8.6E-19
Pfam IPR001304 EMBL-EBI C-type lectin 2.0E-5
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000037464 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:193288_S_AT
gcacggctgatgcaccatttactactgcacagggaatttgcgcaaaaagctgtggaagcc
ttgtgtcaatacattcttcaaatgaagctcaatatatcaccacctttgcgccagaaggtt
ttcactatattggagcgatatggaatcataactcaagtctcaactgggtagatggttctg
cgtgggactacagtaaaattgatccaacatctcctcgaatagattattgtttgaaaatgt
cggtgtttaacggttctccgaccggcttatggtacagtgacaactgtatcgacaatagga
agtacgtgtgcaagcgtgaggctggtgtgcagtgcccaactgtaccaccaacatctgtga
caccaatttcttcaaactcatcaaactgcaacgcagggcgactaatggataatgcagtta
tcaccactccgaattatccagaaaactacttcaacaatgagagatgtacttatcagcttt
ccacattgggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGGCTGATGCACCATTTACTAC 655 315 695 Antisense
GGAAGCCTTGTGTCAATACATTCTT 265 531 748 Antisense
GCTCAATATATCACCACCTTTGCGC 112 303 781 Antisense
CTTTGCGCCAGAAGGTTTTCACTAT 264 221 798 Antisense
TGGGTAGATGGTTCTGCGTGGGACT 645 553 859 Antisense
AATTGATCCAACATCTCCTCGAATA 247 179 891 Antisense
GTTCTCCGACCGGCTTATGGTACAG 45 443 947 Antisense
AGCGTGAGGCTGGTGTGCAGTGCCC 607 81 1007 Antisense
ATCTGTGACACCAATTTCTTCAAAC 43 35 1047 Antisense
TTATCACCACTCCGAATTATCCAGA 551 679 1112 Antisense
TACTTATCAGCTTTCCACATTGGGG 299 645 1161 Antisense
Sequence Source Affymetrix Proprietary Database