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[193285_s_at] Ank repeat /// Ank repeat, BRCA1 C Terminus (BRCT) domain

Description T08G3.7 /REP_DB=WormBase Gene ID /WP=CE20039 /TR=Q9XU47 /GB=CAB05800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat, BRCA1 C Terminus (BRCT) domain
Cluster 6grp_total > 98      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 38.7
(-1.3)
A 		10.4
(-3)
A 		41
(-1.1)
P 		107.5
(3)
P 		97
B 14.5
(-2.3)
A 		6.6
(-3)
A 		72.7
(3)
A 		17.4
(-2)
A 		66
C 36.9
(1.1)
A 		40
(3)
A 		30.2
(-3)
A 		33.4
(-1)
A 		10
avr 30
(-1) 		19
(-3) 		48
(2.1) 		52.8
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 40.9
(0)
A 		7.3
(-3)
A 		38.5
(-0.2)
A 		25.1
(-1.4)
A 		74.4
(3)
P 		72.3
(2.8)
P 		67
B 19.7
(-3)
A 		44.8
(-0.3)
A 		54.7
(0.8)
A 		47.3
(-0)
A 		48.6
(0.1)
P 		75.4
(3)
P 		56
C 9.1
(-3)
A 		54.2
(1)
M 		46.1
(0.3)
M 		27.6
(-1.4)
A 		55
(1.1)
P 		76.7
(3)
P 		68
avr 23.2
(-3) 		35.4
(-1.6) 		46.4
(-0.3) 		33.3
(-1.8) 		59.3
(1.2) 		74.8
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.1
(2.3)
A 		2.3
(-3)
A 		10.7
(0.8)
P 		15.7
(3)
P 		13
B 4.6
(-1.8)
A 		1.6
(-3)
A 		16.9
(3)
A 		3.7
(-2.2)
A 		15
C 12.2
(3)
A 		11.5
(2.4)
A 		10.5
(1.5)
A 		5.6
(-3)
A 		7
avr 10.3
(1.1) 		5.1
(-3) 		12.7
(3) 		8.3
(-0.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 7.5
(-1.5)
A 		2.6
(-3)
A 		8.4
(-1.2)
A 		6.4
(-1.8)
A 		22.4
(3)
P 		17.6
(1.5)
P 		20
B 6.9
(-3)
A 		14.9
(-0.7)
A 		13.3
(-1.2)
A 		12.5
(-1.4)
A 		19.7
(0.6)
P 		28.1
(3)
P 		21
C 3.4
(-3)
A 		16.5
(0.5)
M 		11.7
(-0.8)
M 		5.6
(-2.4)
A 		17.8
(0.9)
P 		25.7
(3)
P 		22
avr 5.9
(-3) 		11.3
(-1.2) 		11.1
(-1.3) 		8.2
(-2.2) 		20
(1.7) 		23.8
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193285_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13498
Sequence Type Exemplar sequence
Representative Public ID T08G3.7 NCBI
Target Description T08G3.7 /REP_DB=WormBase Gene ID /WP=CE20039 /TR=Q9XU47 /GB=CAB05800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat, BRCA1 C Terminus (BRCT) domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074780(11), NM_074763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074780 NCBI Caenorhabditis elegans F36D3.5 (F36D3.5) mRNA, complete cds. 11/11 None
NM_074763 NCBI Caenorhabditis elegans T08G3.7 (T08G3.7) mRNA, complete cds. 11/11 A 
SNAP00000025147 ENSEMBL cdna:SNAP chromosome:CEL140:V:16512959:16517117:-1 11/11 None
GENEFINDER00000025165 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16512959:16517642:-1 11/11 None
SNAP00000031136 ENSEMBL cdna:SNAP chromosome:CEL140:V:16465288:16468939:1 11/11 None
GENEFINDER00000031142 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16465550:16468939:1 11/11 None
T08G3.7 ENSEMBL cdna:known chromosome:CEL140:V:16465020:16468939:1 gene:T08G3.7 11/11 A 
F36D3.5 ENSEMBL cdna:known chromosome:CEL140:V:16512959:16517117:-1 gene:F36D3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16465019-16468939(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ank repeat
Ank repeat, BRCA1 C Terminus (BRCT) domain
Ensembl T08G3.7
F36D3.5
Entrez Gene 185352 Entrez gene
188298 Entrez gene
SwissProt O45463 EMBL-EBI
Q9XU47 EMBL-EBI
WormBase CE15969 Wormbase
CE20039 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04319 Hypothetical protein F36D3.5 [Caenorhabditis elegans] ref|NP_507181.1| F36D3.5 [Caenorhabditis elegans] 0.0
blast CAB04180 Hypothetical protein F26D2.10 [Caenorhabditis elegans] ref|NP_507152.1| F26D2.10 [Caenorhabditis elegans] 0.0
blast CAB05800 Hypothetical protein T08G3.7 [Caenorhabditis elegans] ref|NP_507164.1| T08G3.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-4
Pfam IPR001357 EMBL-EBI BRCT 4.6E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-8
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.1E-31
Pfam IPR001357 EMBL-EBI BRCT 2.5E-15
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-8
Pfam IPR001357 EMBL-EBI BRCT 2.5E-15
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-8
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.1E-31
Pfam IPR001357 EMBL-EBI BRCT 2.5E-15
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-8
Pfam IPR001357 EMBL-EBI BRCT 4.6E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-8
Pfam IPR001357 EMBL-EBI BRCT 2.2E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507181.1 1 755-777
NP_507164.1 1 554-576
T08G3.7 1 554-576
F36D3.5 1 755-777
SNAP00000025147 1 813-835
GENEFINDER00000025165 1 818-840
SNAP00000031136 1 540-562
GENEFINDER00000031142 1 569-591
Sequence
Target Sequence 
>C. ELEGANS:193285_S_AT
agggatccactttcaagactgttcttcagtggagtgaagctatggcaaaaggagctattc
catatctgtacggggtatatgcagcaattgtcatgacggaatgcaagaatttggtaacat
tgaatacccttgtcgcagcccatggtggatttatgatgaaaaccttcccaggaaaggatg
ccttcaacgttggctcacgtccatataatcatgcaaatcttggaccactgtttttgattc
acgatggaacgatcaacttgaaagcctatactgctgatccagacaagatgtgcacgctgt
tcacggaagaagagtttatcaaattcatgctccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGGATCCACTTTCAAGACTGTTCT 396 57 2450 Antisense
ATATCTGTACGGGGTATATGCAGCA 330 17 2511 Antisense
GTATATGCAGCAATTGTCATGACGG 454 453 2524 Antisense
GTAACATTGAATACCCTTGTCGCAG 73 463 2563 Antisense
CTTGTCGCAGCCCATGGTGGATTTA 638 213 2578 Antisense
GATTTATGATGAAAACCTTCCCAGG 125 427 2597 Antisense
AAGGATGCCTTCAACGTTGGCTCAC 5 161 2623 Antisense
TTCAACGTTGGCTCACGTCCATATA 77 685 2632 Antisense
GGCTCACGTCCATATAATCATGCAA 230 539 2641 Antisense
GAAAGCCTATACTGCTGATCCAGAC 388 359 2709 Antisense
GAGTTTATCAAATTCATGCTCCAAA 262 399 2761 Antisense
Sequence Source Affymetrix Proprietary Database