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[193284_at] Ank repeat, BRCA1 C Terminus (BRCT) domain

Description T08G3.7 /REP_DB=WormBase Gene ID /WP=CE20039 /TR=Q9XU47 /GB=CAB05800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat, BRCA1 C Terminus (BRCT) domain
Cluster 6grp_total > 81      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 2.3
(-2.8)
A 		13.1
(0.1)
A 		1.5
(-3)
A 		23.6
(3)
A 		22
B 1.4
(-3)
A 		1.3
(-3)
A 		36.7
(3)
A 		3.8
(-2.6)
A 		35
C 2.8
(-3)
A 		4.4
(-2.2)
A 		15.2
(3)
A 		4.4
(-2.2)
A 		12
avr 2.2
(-3) 		6.3
(-1.4) 		17.8
(3) 		10.6
(0.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 4.6
(-2.6)
A 		5.5
(-2.4)
A 		22.9
(3)
A 		3.4
(-3)
A 		21
(2.4)
A 		6.4
(-2.1)
A 		20
B 12.9
(3)
A 		1.3
(-3)
A 		2.8
(-2.2)
A 		3.4
(-1.9)
A 		10.3
(1.7)
A 		3.2
(-2)
A 		12
C 0.9
(-3)
A 		20.5
(-0.8)
A 		3
(-2.8)
A 		54.6
(3)
A 		3.2
(-2.7)
A 		5.1
(-2.5)
A 		54
avr 6.1
(-2.5) 		9.1
(-1.4) 		9.6
(-1.2) 		20.5
(3) 		11.5
(-0.5) 		4.9
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.8
(-2.2)
A 		2.8
(1.6)
A 		0.4
(-3)
A 		3.5
(3)
A 		3
B 0.4
(-2.9)
A 		0.3
(-3)
A 		8.5
(3)
A 		0.8
(-2.6)
A 		8
C 0.9
(-2.7)
A 		1.3
(-2.2)
A 		5.3
(3)
A 		0.7
(-3)
A 		5
avr 0.7
(-3) 		1.5
(-1.8) 		4.7
(3) 		1.7
(-1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2
(-1.7)
A 		5
(1.6)
A 		0.9
(-2.9)
A 		6.3
(3)
A 		1.6
(-2.1)
A 		6
B 4.5
(3)
A 		0.4
(-3)
A 		0.7
(-2.6)
A 		0.9
(-2.3)
A 		4.2
(2.6)
A 		1.2
(-1.8)
A 		4
C 0.3
(-3)
A 		6.2
(0.3)
A 		0.8
(-2.7)
A 		11
(3)
A 		1
(-2.6)
A 		1.7
(-2.2)
A 		11
avr 1.9
(-2.1) 		2.9
(-0) 		2.2
(-1.5) 		4.3
(3) 		3.8
(1.9) 		1.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13498
Sequence Type Exemplar sequence
Representative Public ID T08G3.7 NCBI
Target Description T08G3.7 /REP_DB=WormBase Gene ID /WP=CE20039 /TR=Q9XU47 /GB=CAB05800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ank repeat, BRCA1 C Terminus (BRCT) domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074763 NCBI Caenorhabditis elegans T08G3.7 (T08G3.7) mRNA, complete cds. 11/11 A 
SNAP00000031136 ENSEMBL cdna:SNAP chromosome:CEL140:V:16465288:16468939:1 11/11 None
GENEFINDER00000031142 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16465550:16468939:1 9/11 None
T08G3.7 ENSEMBL cdna:known chromosome:CEL140:V:16465020:16468939:1 gene:T08G3.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16465019-16468939(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ank repeat, BRCA1 C Terminus (BRCT) domain
Ensembl T08G3.7
Entrez Gene 188298 Entrez gene
SwissProt Q9XU47 EMBL-EBI
WormBase CE20039 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05800 Hypothetical protein T08G3.7 [Caenorhabditis elegans] ref|NP_507164.1| T08G3.7 [Caenorhabditis elegans] 0.0
blast CAB04319 Hypothetical protein F36D3.5 [Caenorhabditis elegans] ref|NP_507181.1| F36D3.5 [Caenorhabditis elegans] 0.0
blast CAB04180 Hypothetical protein F26D2.10 [Caenorhabditis elegans] ref|NP_507152.1| F26D2.10 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-4
Pfam IPR001357 EMBL-EBI BRCT 4.6E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-8
Pfam IPR001357 EMBL-EBI BRCT 4.6E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-8
Pfam IPR001357 EMBL-EBI BRCT 2.2E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507164.1 1 554-576
T08G3.7 1 554-576
SNAP00000031136 1 540-562
GENEFINDER00000031142 1 569-591
Sequence
Target Sequence 
>C. ELEGANS:193284_AT
ttttgtgcctcttgtaagtactattttcagacatccgatgaagcaggactgaacacaacc
catgttattgtgaagacggatgagaatggcgttctggcaactgacagccttgatctactt
ttctgggtgttcaatggagcaataattgtcaaagaacaatggatgattgattgtctgaac
gaggagaagcttattgagcaagattcaaagtatttggtcgatagtgtcaaatacaaggga
tccactttcaagactgttcttcagtggagtgaagctatggcaaaaggagctattccatat
ctgtacggggtatatgcagcaattgtcatgacggaatgcaagaatttggtaacattgaat
acccttgtcgcagcccatggtggatttatgatgaaaaccttcccaggaaaggatgccttc
aacgttggctcacgtccatataatcatgcaaatcttggaccactgtttttgattcacgat
ggaacgatcaacttgaaagcctatactgctgatccagacaagatgtgcacgctgttcacg
gaagaagagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGTGCCTCTTGTAAGTACTATT 50 679 2215 Antisense
AGTACTATTTTCAGACATCCGATGA 697 59 2231 Antisense
GAAGCAGGACTGAACACAACCCATG 547 341 2254 Antisense
GAATGGCGTTCTGGCAACTGACAGC 579 331 2298 Antisense
AACTGACAGCCTTGATCTACTTTTC 662 141 2313 Antisense
AGCCTTGATCTACTTTTCTGGGTGT 94 85 2320 Antisense
GATCTACTTTTCTGGGTGTTCAATG 403 419 2326 Antisense
TTTTCTGGGTGTTCAATGGAGCAAT 155 677 2333 Antisense
GACAAGATGTGCACGCTGTTCACGG 346 365 2731 Antisense
GATGTGCACGCTGTTCACGGAAGAA 442 409 2736 Antisense
GCACGCTGTTCACGGAAGAAGAGTT 508 315 2741 Antisense
Sequence Source Affymetrix Proprietary Database