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[193283_at]

Description R10F2.2 /REP_DB=WormBase Gene ID /WP=CE12706 /TR=O01909 /GB=AAB54265.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=cadherin-containing cell adhesion protein
Cluster 6grp_total > 13      4grp_total > 17      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 44.3
(-3)
P 		50.9
(-1.7)
A 		68.3
(1.7)
A 		74.9
(3)
P 		31
B 24.9
(-3)
A 		63.1
(1.4)
A 		44.6
(-0.7)
A 		76.8
(3)
M 		52
C 48.3
(-2.1)
A 		71
(-0.1)
A 		37.8
(-3)
A 		107
(3)
P 		69
avr 39.2
(-3) 		61.7
(-0.1) 		50.2
(-1.6) 		86.2
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 63.3
(3)
A 		22.2
(-3)
A 		34.1
(-1.3)
A 		27.3
(-2.3)
A 		33.9
(-1.3)
A 		35.1
(-1.1)
A 		41
B 55.6
(1.2)
A 		70.3
(3)
A 		52.5
(0.9)
A 		20.5
(-3)
A 		34.9
(-1.3)
A 		40.5
(-0.6)
P 		50
C 22.5
(-1.6)
A 		45.6
(1.3)
A 		38.1
(0.4)
A 		59.1
(3)
A 		48.8
(1.7)
M 		10.9
(-3)
A 		48
avr 47.1
(3) 		46
(2.6) 		41.6
(1.2) 		35.6
(-0.8) 		39.2
(0.4) 		28.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 16.1
(1.4)
P 		11.1
(-2.9)
A 		17.9
(3)
A 		11
(-3)
P 		7
B 8
(-3)
A 		15.6
(2.4)
A 		10.3
(-1.4)
A 		16.4
(3)
M 		8
C 16
(-0.7)
A 		20.4
(3)
A 		13.2
(-3)
A 		18
(1)
P 		7
avr 13.4
(-3) 		15.7
(3) 		13.8
(-2) 		15.1
(1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.7
(3)
A 		7.9
(-1.8)
A 		7.4
(-2.4)
A 		6.9
(-3)
A 		10.2
(1.1)
A 		8.5
(-1)
A 		5
B 19.3
(1.6)
A 		23.4
(3)
A 		12.8
(-0.5)
A 		5.4
(-3)
A 		14.2
(-0.1)
A 		15.1
(0.2)
P 		18
C 8.4
(-0.6)
A 		13.9
(2.1)
A 		9.7
(-0)
A 		11.9
(1.1)
A 		15.8
(3)
M 		3.6
(-3)
A 		12
avr 13.1
(1.3) 		15.1
(3) 		10
(-1.4) 		8.1
(-3) 		13.4
(1.5) 		9.1
(-2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6763
Sequence Type Exemplar sequence
Representative Public ID R10F2.2 NCBI
Target Description R10F2.2 /REP_DB=WormBase Gene ID /WP=CE12706 /TR=O01909 /GB=AAB54265.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=cadherin-containing cell adhesion protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065240
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016981 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2914595:2920283:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065240 5/11 Cross Hyb Matching Probes None
SNAP00000016974 5/11 Cross Hyb Matching Probes None
R10F2.1 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2914594-2920283(+) 92.81 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15273 hypothetical protein R10F2.2 - Caenorhabditis elegans 0.0
blast NP_497641 R10F2.1 [Caenorhabditis elegans] gb|AAW88390.1| Hypothetical protein R10F2.1 [Caenorhabditis elegans] 0.0
blast CAE69527 Hypothetical protein CBG15736 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 1.3E-9
Pfam IPR002126 EMBL-EBI Cadherin 3.0E-22
Pfam IPR002126 EMBL-EBI Cadherin 1.6E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016981 1 550-572
Sequence
Target Sequence 
>C. ELEGANS:193283_AT
aatgataacgccccgcaatggcacagctcacagattcatatttccctgaatcggacgcag
ggaggttcgaggactttgactgcgaaagatccggatttgggacaaaatggatggattcgg
tattcggtgttggataccgagctggtatcgattgataaggaaactggacggatttttgtc
ccgaatacgatcgactgcaatattgggtcagagattaaattccgagttcgcgccgaggac
ggagggtctccagcactttctacagatttacaggttgttgccgatctcctcgacacggaa
tccaagccaccccaatttgaaaaagccctctggcaagtggaaattcctgaagatacccca
attggcacgtgtttggttaagtataaaaaaatatttcgggcttctcattccgtcttcttt
tctgtggtccttttctttgcagaagcggctcttttcggtccggcagcactagttgctcgt
tcactggcatttgttcccgggcgggagctagttccgggacgggatccacttctggtgcgg
ggtttggtagttgtagtgcttgagccagctgattcgcttcttttgactgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGATAACGCCCCGCAATGGCACA 343 165 1252 Antisense
ACAGCTCACAGATTCATATTTCCCT 56 109 1274 Antisense
GGGAGGTTCGAGGACTTTGACTGCG 616 495 1311 Antisense
GACGGATTTTTGTCCCGAATACGAT 669 327 1418 Antisense
GTCTCCAGCACTTTCTACAGATTTA 489 471 1497 Antisense
TTTTCTGTGGTCCTTTTCTTTGCAG 395 677 1669 Antisense
GTTGCTCGTTCACTGGCATTTGTTC 34 441 1723 Antisense
GGAGCTAGTTCCGGGACGGGATCCA 267 513 1755 Antisense
ATCCACTTCTGGTGCGGGGTTTGGT 205 23 1775 Antisense
GTAGTGCTTGAGCCAGCTGATTCGC 138 457 1804 Antisense
GCTGATTCGCTTCTTTTGACTGAAA 685 295 1819 Antisense
Sequence Source Affymetrix Proprietary Database