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[193281_at] acetylglucosaminyltransferase-like domain

Description T09E11.6 /REP_DB=WormBase Gene ID /WP=CE13507 /TR=O02312 /GB=CAB03539.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase-like domain
Cluster 6grp_total > 02      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 23.7
(-3)
A 		39
(-0.9)
A 		53.2
(1.1)
A 		66.5
(3)
A 		43
B 38.4
(3)
A 		27.9
(-1.2)
A 		23.4
(-3)
A 		28.3
(-1)
A 		15
C 45.4
(-0.2)
A 		42.2
(-0.5)
A 		12.7
(-3)
A 		83.1
(3)
P 		70
avr 35.8
(-1.8) 		36.4
(-1.7) 		29.8
(-3) 		59.3
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 35.1
(1.4)
A 		33.9
(1.2)
A 		42.8
(2.4)
P 		1.9
(-3)
A 		47.6
(3)
A 		15.9
(-1.2)
A 		46
B 35.3
(2)
A 		39.1
(3)
A 		24.4
(-1)
A 		33
(1.3)
A 		17.3
(-3)
A 		18.9
(-2.6)
A 		22
C 39.5
(2.8)
A 		40.9
(3)
P 		27.2
(0.7)
A 		15.4
(-1.2)
A 		40
(2.9)
A 		4.6
(-3)
A 		36
avr 36.6
(2.7) 		38
(3) 		31.5
(1.4) 		16.8
(-2.1) 		35
(2.3) 		13.1
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.6
(-2.9)
A 		8.5
(-3)
A 		13.9
(3)
A 		9.7
(-1.7)
A 		5
B 12.2
(3)
A 		6.9
(-1.7)
A 		5.4
(-3)
A 		6
(-2.5)
A 		7
C 15
(3)
A 		12.1
(1.4)
A 		4.4
(-3)
A 		14
(2.4)
P 		11
avr 11.9
(3) 		9.2
(-1.1) 		7.9
(-3) 		9.9
(0) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.5
(-0.4)
A 		12.1
(2)
A 		9.3
(0.8)
P 		0.5
(-3)
A 		14.4
(3)
A 		3.9
(-1.5)
A 		14
B 12.3
(2.4)
A 		13
(3)
A 		5.9
(-3)
A 		8.7
(-0.6)
A 		7
(-2.1)
A 		7.1
(-2)
A 		7
C 14.6
(3)
A 		12.5
(2)
P 		6.9
(-0.5)
A 		3.1
(-2.3)
A 		12.9
(2.2)
A 		1.5
(-3)
A 		13
avr 11.1
(2) 		12.5
(3) 		7.4
(-0.6) 		4.1
(-3) 		11.4
(2.2) 		4.2
(-2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193281_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.469
Sequence Type Exemplar sequence
Representative Public ID T09E11.6 NCBI
Target Description T09E11.6 /REP_DB=WormBase Gene ID /WP=CE13507 /TR=O02312 /GB=CAB03539.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060729(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060729 NCBI Caenorhabditis elegans T09E11.6 (T09E11.6) mRNA, complete cds. 11/11 None
SNAP00000042469 ENSEMBL cdna:SNAP chromosome:CEL140:I:12372840:12376741:1 11/11 None
T09E11.6 ENSEMBL cdna:known chromosome:CEL140:I:12372840:12376478:1 gene:T09E11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042475 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12372770-12376409(+) 100.0 100.0
Public Domain and Genome References
Gene Title acetylglucosaminyltransferase-like domain
Ensembl T09E11.6
Entrez Gene 188334 Entrez gene
SwissProt O02312 EMBL-EBI
WormBase CE13507 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03539 Hypothetical protein T09E11.6 [Caenorhabditis elegans] ref|NP_493130.1| T09E11.6 [Caenorhabditis elegans] 0.0
blast AAC26306 Hypothetical protein H41C03.3 [Caenorhabditis elegans] ref|NP_495166.2| H41C03.3 [Caenorhabditis elegans] 1.0E-152
blast CAB03536 Hypothetical protein T09E11.9 [Caenorhabditis elegans] ref|NP_493125.1| T09E11.9 [Caenorhabditis elegans] 1.0E-134
blast AAC26306 Hypothetical protein H41C03.3 [Caenorhabditis elegans] ref|NP_495166.2| H41C03.3 [Caenorhabditis elegans] 1.0E-125
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.4E-115
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.4E-115
Sequence
Target Sequence 
>C. ELEGANS:193281_AT
aacaaatgtctcaaagccctactcgacatacctggctggaactacgctttgctacttcaa
aatcacgatcttataatgaaatctgtgtatgagatggagcaaatcttcgagtggctcggg
ggagcgaacgatatttttgtgactcacgaaattggtcgagtcgatgtgaaaaagctgaag
tgggatccaatgtcgctaaaattgtttataaatgaaactgaaatggacaagttattactg
acaactcctatgaaaattgtgaaaggatgggttcactgttccttgtcgagagcgtcagtt
gagtggatgtttcagaaacttgatccatcaatttttatgcatcaattgaaccagggtaga
tatggagttgatgagcagtattttcctatccttcaggccaatgcagagttcggaatgcct
ggacactttaccgatgagtgcctgcagcaaggaaaaactacagagttcataacaagaatt
gccttatgggtgcccgaaagcaagtgtgacacgaatatgactcgtcatgcagtctgcatc
attggtctagagcacttccaagccgttgcgtcgtttacacatttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAAATGTCTCAAAGCCCTACTCG 534 135 1648 Antisense
CTACTCGACATACCTGGCTGGAACT 2 227 1666 Antisense
CTGGAACTACGCTTTGCTACTTCAA 215 241 1683 Antisense
CACTGTTCCTTGTCGAGAGCGTCAG 6 199 1921 Antisense
TGAGCAGTATTTTCCTATCCTTCAG 248 569 2019 Antisense
TATCCTTCAGGCCAATGCAGAGTTC 571 657 2034 Antisense
GCAGAGTTCGGAATGCCTGGACACT 372 313 2050 Antisense
GACACTTTACCGATGAGTGCCTGCA 176 351 2069 Antisense
AGAATTGCCTTATGGGTGCCCGAAA 420 73 2122 Antisense
GCAGTCTGCATCATTGGTCTAGAGC 457 311 2176 Antisense
CCGTTGCGTCGTTTACACATTTGAT 51 265 2210 Antisense
Sequence Source Affymetrix Proprietary Database