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[193280_s_at] S.pombe hypothetical protein C1D4.09C like

Description C01A2.5 /REP_DB=WormBase Gene ID /WP=CE07787 /TR=O02209 /GB=CAB02700.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C1D4.09C like
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 73      6grp_total > 86      4grp_total > 11      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1011
1 2 3 4 range
A 471.3
(-2.2)
P 		556.9
(-1.7)
P 		346.8
(-3)
P 		1333.7
(3)
P 		987
B 572.9
(-1)
P 		453.9
(-2)
P 		322.5
(-3)
P 		1080.3
(3)
P 		758
C 558.1
(-1.8)
P 		585.7
(-1.5)
P 		437.3
(-3)
P 		1039.5
(3)
P 		602
avr 534.1
(-1.7) 		532.2
(-1.7) 		368.9
(-3) 		1151.2
(3) 		782

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 546.7
(-0.7)
P 		402.1
(-3)
P 		772
(3)
P 		596.6
(0.2)
P 		607.3
(0.3)
P 		575.8
(-0.2)
P 		370
B 505.1
(-2.8)
P 		569.2
(-0.8)
P 		497
(-3)
P 		592.7
(-0.1)
P 		579.9
(-0.5)
P 		698.2
(3)
P 		201
C 585.6
(0.6)
P 		457
(-2)
P 		405.1
(-3)
P 		551.1
(-0.1)
P 		550.3
(-0.1)
P 		703.4
(3)
P 		298
avr 545.8
(-0.7) 		476.1
(-3) 		558
(-0.3) 		580.1
(0.4) 		579.2
(0.4) 		659.1
(3) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 171.6
(1.6)
P 		120.9
(-1.3)
P 		90.7
(-3)
P 		195.2
(3)
P 		105
B 182.7
(1.2)
P 		112.1
(-1.6)
P 		74.7
(-3)
P 		230.2
(3)
P 		156
C 184.8
(3)
P 		168.4
(-0)
P 		152.4
(-3)
P 		175.3
(1.2)
P 		32
avr 179.7
(1.7) 		133.8
(-1.2) 		105.9
(-3) 		200.2
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 100.8
(-3)
P 		143
(0.1)
P 		168.1
(1.9)
P 		151.3
(0.7)
P 		183.3
(3)
P 		140.2
(-0.1)
P 		83
B 175.7
(-0.6)
P 		189.5
(-0)
P 		120.7
(-3)
P 		157
(-1.4)
P 		235.6
(1.9)
P 		260.4
(3)
P 		140
C 217
(2.2)
P 		139.4
(-1.4)
P 		103.1
(-3)
P 		110.8
(-2.7)
P 		178.1
(0.4)
P 		235.5
(3)
P 		132
avr 164.5
(-0.5) 		157.3
(-1) 		130.6
(-3) 		139.7
(-2.3) 		199
(2) 		212
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193280_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.911
Sequence Type Exemplar sequence
Representative Public ID C01A2.5 NCBI
Target Description C01A2.5 /REP_DB=WormBase Gene ID /WP=CE07787 /TR=O02209 /GB=CAB02700.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=S.pombe hypothetical protein C1D4.09C like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060954 NCBI Caenorhabditis elegans C01A2.5 (C01A2.5) mRNA, complete cds. 11/11 A 
SNAP00000025716 ENSEMBL cdna:SNAP chromosome:CEL140:I:13392953:13395070:1 11/11 None
GENEFINDER00000025744 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13392953:13395070:1 11/11 None
C01A2.5 ENSEMBL cdna:known chromosome:CEL140:I:13392882:13395203:1 gene:C01A2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13392883-13395001(+) 100.0 100.0
Public Domain and Genome References
Gene Title S.pombe hypothetical protein C1D4.09C like
Ensembl C01A2.5
Entrez Gene 173206 Entrez gene
SwissProt O02209 EMBL-EBI
WormBase CE07787 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247840_AT expressed protein at
CANINE:1583562_S_AT similar to Protein C20orf43 cfa
CANINE:1583561_AT similar to Protein C20orf43 cfa
CANINE_2:CFA.4613.1.A1_AT similar to Protein C20orf43 cfa
CANINE_2:CFAAFFX.18566.1.S1_AT similar to Protein C20orf43 cfa
CANINE_2:CFAAFFX.18566.1.S1_S_AT similar to Protein C20orf43 cfa
DROSOPHILA_2:1641336_AT dm
DROSGENOME1:142869_AT dm
CHICKEN:GGA.4506.1.A1_AT similar to Protein C20orf43 (HSPC164/HSPC169) (AD-007) (CDA05) gga
CHICKEN:GGAAFFX.12506.1.S1_AT similar to Protein C20orf43 (HSPC164/HSPC169) (AD-007) (CDA05) gga
HG-U133_PLUS_2:217737_X_AT chromosome 20 open reading frame 43 hs
HG-U133A:217737_X_AT chromosome 20 open reading frame 43 hs
HG-U133A_2:217737_X_AT chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:234926_S_AT chromosome 20 open reading frame 43 hs
HG-U133B:234926_S_AT chromosome 20 open reading frame 43 hs
HG-U133B:224128_AT chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:224128_AT chromosome 20 open reading frame 43 hs
HU35KSUBA:RC_AA411829_AT chromosome 20 open reading frame 43 hs
HU35KSUBA:AA313653_AT chromosome 20 open reading frame 43 hs
U133_X3P:G12803852_3P_AT chromosome 20 open reading frame 43 hs
U133_X3P:HS.182281.2.A1_3P_A_AT chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:233842_X_AT chromosome 20 open reading frame 43 hs
HG-U133B:233842_X_AT chromosome 20 open reading frame 43 hs
HG-U95B:45259_AT chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:234540_AT Chromosome 20 open reading frame 43 hs
HG-U133B:234540_AT Chromosome 20 open reading frame 43 hs
U133_X3P:HS.287760.0.S1_3P_AT Chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:236702_AT Chromosome 20 open reading frame 43 hs
HG-U133B:236702_AT Chromosome 20 open reading frame 43 hs
HG-U133_PLUS_2:242040_AT Chromosome 20 open reading frame 43 hs
HG-U133B:242040_AT Chromosome 20 open reading frame 43 hs
HG-U95B:56709_AT Chromosome 20 open reading frame 43 hs
HG-U95E:69731_AT Chromosome 20 open reading frame 43 hs
U133_X3P:HS.93761.0.A1_3P_AT Chromosome 20 open reading frame 43 hs
HU35KSUBC:RC_N32877_AT Chromosome 20 open reading frame 43 hs
U133_X3P:HS.201076.0.A1_3P_AT Chromosome 20 open reading frame 43 hs
MG-U74AV2:95501_AT RIKEN cDNA 2410001C21 gene mm
MOE430A:1460362_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430A_2:1460362_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430_2:1460362_AT RIKEN cDNA 2410001C21 gene mm
MOE430A:1424564_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430A_2:1424564_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430_2:1424564_AT RIKEN cDNA 2410001C21 gene mm
MOUSE430_2:1446314_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MOE430B:1446314_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MG-U74BV2:164727_R_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MU19KSUBB:TC33974_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MU19KSUBB:TC33974_G_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MU19KSUBB:TC34765_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
MU19KSUBC:TC35584_AT RIKEN cDNA 2410001C21 gene, mRNA (cDNA clone MGC:8144 IMAGE:3589578) mm
Protein Similarities
Method ID Description E-Value
blast CAB02700 Hypothetical protein C01A2.5 [Caenorhabditis elegans] ref|NP_493355.1| C01A2.5 [Caenorhabditis elegans] 1.0E-125
blast CAE73030 Hypothetical protein CBG20397 [Caenorhabditis briggsae] 1.0E-109
blast XP_392777 PREDICTED: similar to ENSANGP00000006158 [Apis mellifera] 1.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR006735 EMBL-EBI Protein of unknown function DUF602 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:193280_S_AT
aaactgaattcatttgcccaatcacaaatgttccaatgaacggaattcaaagtttcttag
ttaattggcagtgtggatgtgtgtattcagagaaagctcaacaagaagttaaatcctcaa
attgtcatgtttgtggaggaccttatgatgccacaaaaatggtgattttgaatccggagc
cggagcaattagagctctacaagctgaaatgggaggctgagaaagctgaaaaagcggcgg
cgaagaaggataaagcaaagaaaacagctgagaagatggaggctgccgctagtttggctg
ctggatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTGAATTCATTTGCCCAATCAC 555 127 347 Antisense
TTGCCCAATCACAAATGTTCCAATG 173 703 360 Antisense
AAGTTTCTTAGTTAATTGGCAGTGT 611 135 396 Antisense
GGCAGTGTGGATGTGTGTATTCAGA 517 535 413 Antisense
GAAGTTAAATCCTCAAATTGTCATG 376 333 451 Antisense
AATTGTCATGTTTGTGGAGGACCTT 394 177 466 Antisense
GGAGGACCTTATGATGCCACAAAAA 586 515 481 Antisense
GGTGATTTTGAATCCGGAGCCGGAG 453 499 507 Antisense
GAGCCGGAGCAATTAGAGCTCTACA 401 385 523 Antisense
GAAGATGGAGGCTGCCGCTAGTTTG 706 337 618 Antisense
GCCGCTAGTTTGGCTGCTGGATCAG 382 285 631 Antisense
Sequence Source Affymetrix Proprietary Database