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[193279_at] galactose-1-phosphate uridylyltransferase

Description ZK1058.3 /REP_DB=WormBase Gene ID /WP=CE01103 /TR=Q27536 /GB=CAA84679.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=galactose-1-phosphate uridylyltransferase
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 90      6grp_total > 87      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 146.7
(-0.3)
P 		116.3
(-3)
P 		135.4
(-1.3)
P 		183.3
(3)
P 		67
B 143.6
(0.9)
P 		133.6
(-0.1)
P 		103.8
(-3)
P 		165.4
(3)
P 		62
C 139.2
(-1)
P 		121.7
(-3)
P 		174.2
(3)
P 		143
(-0.6)
P 		53
avr 143.2
(-0.1) 		123.9
(-3) 		137.8
(-0.9) 		163.9
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 100.4
(-2.6)
P 		94
(-2.9)
P 		90
(-3)
P 		148.5
(-0.9)
P 		132.9
(-1.4)
P 		253.5
(3)
P 		164
B 110.9
(-1.5)
P 		78.1
(-3)
P 		139.6
(-0.1)
P 		174.6
(1.5)
P 		162.5
(1)
P 		205.8
(3)
P 		128
C 161.5
(0.9)
P 		119.9
(-1.6)
P 		111.3
(-2.2)
P 		97.5
(-3)
P 		168.9
(1.4)
P 		195.4
(3)
P 		98
avr 124.3
(-1.7) 		97.3
(-3) 		113.6
(-2.2) 		140.2
(-0.9) 		154.8
(-0.1) 		218.2
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 53.4
(3)
P 		25.2
(-3)
P 		35.4
(-0.8)
P 		26.8
(-2.7)
P 		28
B 45.8
(3)
P 		33
(-0.5)
P 		24.1
(-3)
P 		35.2
(0.1)
P 		22
C 46.1
(0.6)
P 		35
(-1.2)
P 		60.7
(3)
P 		24.1
(-3)
P 		37
avr 48.4
(3) 		31.1
(-2.3) 		40.1
(0.5) 		28.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 18.5
(-3)
P 		33.4
(-0.9)
P 		19.6
(-2.8)
P 		37.7
(-0.3)
P 		40.1
(-0)
P 		61.7
(3)
P 		43
B 38.6
(-1.5)
P 		26
(-3)
P 		33.9
(-2.1)
P 		46.2
(-0.6)
P 		66
(1.7)
P 		76.7
(3)
P 		51
C 59.9
(2.3)
P 		36.6
(-0.8)
P 		28.3
(-1.9)
P 		19.6
(-3)
P 		54.7
(1.6)
P 		65.4
(3)
P 		46
avr 39
(-1.3) 		32
(-2.3) 		27.3
(-3) 		34.5
(-1.9) 		53.6
(0.9) 		67.9
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7148
Sequence Type Exemplar sequence
Representative Public ID ZK1058.3 NCBI
Target Description ZK1058.3 /REP_DB=WormBase Gene ID /WP=CE01103 /TR=Q27536 /GB=CAA84679.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=galactose-1-phosphate uridylyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065388 NCBI Caenorhabditis elegans ZK1058.3 (ZK1058.3) mRNA, complete cds. 11/11 None
SNAP00000000032 ENSEMBL cdna:SNAP chromosome:CEL140:III:3918848:3920613:1 11/11 None
ZK1058.3 ENSEMBL cdna:known chromosome:CEL140:III:3918846:3920674:1 gene:ZK1058.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000037 3/11 Cross Hyb Matching Probes None
GENEFINDER00000000038 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3918847-3920613(+) 100.0 100.0
Public Domain and Genome References
Gene Title galactose-1-phosphate uridylyltransferase
Ensembl ZK1058.3
Entrez Gene 175506 Entrez gene
SwissProt Q27536 EMBL-EBI
WormBase CE01103 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599965_AT similar to galactose-1-phosphate uridylyltransferase isoform 1 cfa
CANINE_2:CFA.12029.1.A1_AT similar to galactose-1-phosphate uridylyltransferase isoform 1 cfa
CANINE_2:CFA.4917.1.A1_AT similar to galactose-1-phosphate uridylyltransferase isoform 1 cfa
CANINE_2:CFAAFFX.3846.1.S1_AT similar to galactose-1-phosphate uridylyltransferase isoform 1 cfa
CANINE_2:CFAAFFX.3848.1.S1_S_AT similar to galactose-1-phosphate uridylyltransferase isoform 1 cfa
DROSOPHILA_2:1641647_AT dm
DROSGENOME1:153364_AT dm
CHICKEN:GGAAFFX.1454.1.S1_AT similar to Galactose-1-phosphate uridylyltransferase (Gal-1-P uridylyltransferase) (UDP-glucose--hexose-1-phosphate uridylyltransferase) gga
HG-U133_PLUS_2:232708_AT galactose-1-phosphate uridylyltransferase hs
HG-U133B:232708_AT galactose-1-phosphate uridylyltransferase hs
HG-U95AV2:36664_AT galactose-1-phosphate uridylyltransferase hs
HG-U133A:203179_AT galactose-1-phosphate uridylyltransferase hs
HG-U133_PLUS_2:203179_AT galactose-1-phosphate uridylyltransferase hs
HG-U133A_2:203179_AT galactose-1-phosphate uridylyltransferase hs
HG-FOCUS:203179_AT galactose-1-phosphate uridylyltransferase hs
HUGENEFL:M60091_AT galactose-1-phosphate uridylyltransferase hs
HUGENEFL:M18731_AT galactose-1-phosphate uridylyltransferase hs
U133_X3P:G4557614_3P_AT galactose-1-phosphate uridylyltransferase hs
U133_X3P:HS.75641.1.S1_3P_AT galactose-1-phosphate uridylyltransferase hs
U133_X3P:HS.222102.0.A1_3P_X_AT galactose-1-phosphate uridylyltransferase hs
U133_X3P:HS.222102.0.A1_3P_AT galactose-1-phosphate uridylyltransferase hs
U133_X3P:242734_3P_X_AT galactose-1-phosphate uridylyltransferase hs
HG-U133_PLUS_2:242734_X_AT galactose-1-phosphate uridylyltransferase hs
HG-U133B:242734_X_AT galactose-1-phosphate uridylyltransferase hs
HG-U95D:89718_AT galactose-1-phosphate uridylyltransferase hs
MOE430A:1450187_A_AT galactose-1-phosphate uridyl transferase mm
MOUSE430_2:1450187_A_AT galactose-1-phosphate uridyl transferase mm
MOUSE430A_2:1450187_A_AT galactose-1-phosphate uridyl transferase mm
MU11KSUBA:U41282_S_AT galactose-1-phosphate uridyl transferase mm
MU11KSUBB:MSA.676.0_AT galactose-1-phosphate uridyl transferase mm
MU11KSUBB:MSA.676.0_G_AT galactose-1-phosphate uridyl transferase mm
MG-U74AV2:104616_G_AT galactose-1-phosphate uridyl transferase mm
MG-U74AV2:104615_AT galactose-1-phosphate uridyl transferase mm
MU19KSUBA:TC19091_S_AT Galactose-1-phosphate uridyl transferase, mRNA (cDNA clone MGC:14011 IMAGE:4038194) mm
MU19KSUBC:TC36557_AT Galactose-1-phosphate uridyl transferase, mRNA (cDNA clone MGC:14011 IMAGE:4038194) mm
RG-U34A:L05541_AT galactose-1-phosphate uridyl transferase (predicted) rn
RAE230A:1371251_AT galactose-1-phosphate uridyl transferase (predicted) rn
RAT230_2:1371251_AT galactose-1-phosphate uridyl transferase (predicted) rn
YEAST_2:1775628_AT Galactose-1-phosphate uridyl transferase, synthesizes glucose-1-phosphate and UDP-galactose from UDP-D-glucose and alpha-D-galactose-1-phosphate in the second step of galactose catabolism Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6012 galactose metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3982 UTP:hexose-1-phosphate uridylyltransferase activity inferred from electronic annotation QuickGO AmiGO
8108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84679 Hypothetical protein ZK1058.3 [Caenorhabditis elegans] ref|NP_497789.1| ZK1058.3 [Caenorhabditis elegans] sp|Q27536|GALT_CAEEL Probable galactose-1-phosphate uridylyltransferase (Gal-1-P uridylyltransferase) (UDP-glucose--hexose-1-phosphate uridylyltransferase) 0.0
blast CAE60079 Hypothetical protein CBG03599 [Caenorhabditis briggsae] 1.0E-166
blast Q03249 Galactose-1-phosphate uridylyltransferase (Gal-1-P uridylyltransferase) (UDP-glucose--hexose-1-phosphate uridylyltransferase) 2.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR005850 EMBL-EBI Galactose-1-phosphate uridyl transferase, C-terminal 3.5E-63
Pfam IPR005849 EMBL-EBI Galactose-1-phosphate uridyl transferase, N-terminal 5.3E-49
Sequence
Target Sequence 
>C. ELEGANS:193279_AT
cgtggagcagttgtcggatgttcgaatatgcatccacatgggcaactgtgggcgtcaaat
tatcttccgacgctgccaatgaagaagcatgagagtcaaaagaaacatttcgaaaagcac
gggaaggttatgctgatggactatctggagcaggaaactctaaaaaaggaacgaataatc
atgagaaatgagcactggacttggctcgtaccgtactgggcattctggccgtatgagaca
atgcttctaccaaatcgacacgtggaacgattcactgatttgggagaggttgaaaagcaa
tcactctctgaaattcttcgttctctactcatcaagtacgacaatgtctttgaatgctca
tttccctacatgatgggatggtctggagccccaactggctcttttctgactgaaaattgc
tcattttggcagctccacttgtcattcttcccgccacttcttcgttcggcgactgttccg
aaattccttgctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGAGCAGTTGTCGGATGTTCGA 549 243 475 Antisense
CATGGGCAACTGTGGGCGTCAAATT 525 209 511 Antisense
CGTCAAATTATCTTCCGACGCTGCC 607 245 527 Antisense
ATGAGCACTGGACTTGGCTCGTACC 287 43 662 Antisense
TACCGTACTGGGCATTCTGGCCGTA 371 379 683 Antisense
AATGCTTCTACCAAATCGACACGTG 122 167 714 Antisense
AGCAATCACTCTCTGAAATTCTTCG 596 75 770 Antisense
TTCTTCGTTCTCTACTCATCAAGTA 150 691 788 Antisense
GTCTTTGAATGCTCATTTCCCTACA 274 467 820 Antisense
TTCTTCGTTCGGCGACTGTTCCGAA 479 685 932 Antisense
GACTGTTCCGAAATTCCTTGCTGGA 229 375 945 Antisense
Sequence Source Affymetrix Proprietary Database