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[193277_at] Human mRNA KIAA0066 predicted protein like

Description F20D1.6 /REP_DB=WormBase Gene ID /WP=CE09499 /TR=Q93538 /GB=CAB01748.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Human mRNA KIAA0066 predicted protein like
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 74      6grp_total > 18      4grp_total > 13      6grp_highest_sub > De      6grp_cgc > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 822.2
(0)
P 		812.2
(-0.1)
P 		623.1
(-3)
P 		1017.2
(3)
P 		394
B 821.2
(0.1)
P 		677.6
(-3)
P 		776.7
(-0.9)
P 		958.6
(3)
P 		281
C 798.3
(2.8)
P 		695.7
(-3)
P 		700.7
(-2.7)
P 		802.3
(3)
P 		107
avr 813.9
(0) 		728.5
(-2.2) 		700.2
(-3) 		926
(3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 785.1
(2.3)
P 		831.2
(3)
P 		446.5
(-3)
P 		801.4
(2.5)
P 		586.9
(-0.8)
P 		803.9
(2.6)
P 		385
B 731.7
(3)
P 		613.1
(-0.1)
P 		502.1
(-3)
P 		702.8
(2.2)
P 		599.5
(-0.5)
P 		598.6
(-0.5)
P 		230
C 847.7
(2.9)
P 		603.2
(-1.9)
P 		850.4
(3)
P 		556.7
(-2.8)
P 		726.9
(0.6)
P 		544.7
(-3)
P 		306
avr 788.2
(3) 		682.5
(-0.4) 		599.7
(-3) 		687
(-0.2) 		637.8
(-1.8) 		649.1
(-1.4) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 299.4
(3)
P 		176.3
(-1.9)
P 		162.9
(-2.4)
P 		148.9
(-3)
P 		151
B 261.9
(3)
P 		167.4
(-3)
P 		180
(-2.2)
P 		204.3
(-0.7)
P 		95
C 264.3
(3)
P 		200
(0)
P 		244.2
(2.1)
P 		135.3
(-3)
P 		129
avr 275.2
(3) 		181.2
(-2) 		195.7
(-1.2) 		162.8
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 144.7
(-1.6)
P 		295.6
(3)
P 		97.2
(-3)
P 		203.2
(0.2)
P 		177.1
(-0.6)
P 		195.7
(-0)
P 		198
B 254.6
(3)
P 		204.1
(0.7)
P 		121.9
(-3)
P 		186.1
(-0.1)
P 		243.6
(2.5)
P 		223.2
(1.6)
P 		133
C 314.2
(3)
P 		184.1
(-0.9)
P 		216.4
(0.1)
P 		112
(-3)
P 		235.2
(0.7)
P 		182.3
(-0.9)
P 		202
avr 237.8
(3) 		227.9
(2.4) 		145.2
(-3) 		167.1
(-1.6) 		218.6
(1.8) 		200.4
(0.6) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17698
Sequence Type Exemplar sequence
Representative Public ID F20D1.6 NCBI
Target Description F20D1.6 /REP_DB=WormBase Gene ID /WP=CE09499 /TR=Q93538 /GB=CAB01748.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Human mRNA KIAA0066 predicted protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078089 NCBI Caenorhabditis elegans RaB GAP related family member (rbg-1) (rbg-1) mRNA, complete cds. 11/11 None
SNAP00000040734 ENSEMBL cdna:SNAP chromosome:CEL140:X:14983477:14987148:1 11/11 None
GENEFINDER00000040747 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14983477:14987148:1 11/11 None
F20D1.6 ENSEMBL cdna:known chromosome:CEL140:X:14983441:14987271:1 gene:F20D1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14983476-14987148(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human mRNA KIAA0066 predicted protein like
Gene Symbol rbg-1
Ensembl F20D1.6
Entrez Gene 181595 Entrez gene
SwissProt Q93538 EMBL-EBI
WormBase CE09499 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01748 Hypothetical protein F20D1.6 [Caenorhabditis elegans] ref|NP_510490.1| RaB GAP related family member (rbg-1) [Caenorhabditis elegans] sp|Q93538|RB3GP_CAEEL Rab3 GTPase-activating protein catalytic subunit (Rab3 GTPase-activating protein 1) 0.0
blast CAE63273 Hypothetical protein CBG07650 [Caenorhabditis briggsae] 0.0
blast AAH68420 Wu:fj56a04 protein [Danio rerio] 2.0E-56
Sequence
Target Sequence 
>C. ELEGANS:193277_AT
aacgcaactctcgatcaagttcgcgaatggatgaagccaaccgtgtttgcagccacgtta
gaacgcctcacagaaatcgagagcagctatggcgtgtctgaggagaaacaaaagcagcgg
accaagacagccaaaattctagcaaacgcgacgctcaacaacactccaatggattacaat
gaaatttccaagtactgtagccagatcgaaatgattcataacatgaaggtccacttgatg
caacttttcgaaaatgctagagaaaaaatgcacccgccatatccatcggaaactgatgtt
caaagcgcaatcaaacaattggtgaacattgctgtacataacctttgggataattctact
gatgaggagccgacgtttgtcatcaagccacaggatccgattggaagagctatagctgta
attggaaaacttgatgagctcacggagcagcaactgattaatgggcacagaaaagagtac
atcttcaactggaagcacagctgcccgtcaaccacaacaatccccatgacacaccgaatg
tatgctgacttgcgatccgacaagcacagcctatacttttccatggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCAACTCTCGATCAAGTTCGCG 268 145 2137 Antisense
TGAAGCCAACCGTGTTTGCAGCCAC 163 575 2168 Antisense
TTGCAGCCACGTTAGAACGCCTCAC 481 703 2183 Antisense
GAGAGCAGCTATGGCGTGTCTGAGG 367 393 2215 Antisense
AAAGCAGCGGACCAAGACAGCCAAA 353 123 2247 Antisense
GAAGGTCCACTTGATGCAACTTTTC 30 335 2361 Antisense
CACCCGCCATATCCATCGGAAACTG 278 201 2407 Antisense
AGGAGCCGACGTTTGTCATCAAGCC 77 57 2501 Antisense
TTCAACTGGAAGCACAGCTGCCCGT 567 683 2620 Antisense
TGTATGCTGACTTGCGATCCGACAA 408 559 2675 Antisense
GCACAGCCTATACTTTTCCATGGCC 497 317 2700 Antisense
Sequence Source Affymetrix Proprietary Database