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[193272_s_at] O.volvulus antigen peptide like

Description F15B9.1 /REP_DB=WormBase Gene ID /WP=CE09406 /GEN=far-3 /TR=Q19478 /GB=CAB01422.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=O.volvulus antigen peptide like
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 18      6grp_total > 62      4grp_total > 21      6grp_highest_sub > 03_04      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1146
1 2 3 4 range
A 1288
(2.8)
P 		731.3
(-0.7)
P 		374.3
(-3)
P 		1315.7
(3)
P 		941
B 1080.8
(2.1)
P 		794.6
(0.3)
P 		286.4
(-3)
P 		1224.4
(3)
P 		938
C 1305.1
(2.3)
P 		873.9
(-0.1)
P 		357.4
(-3)
P 		1432.2
(3)
P 		1075
avr 1224.6
(2.4) 		799.9
(-0.2) 		339.4
(-3) 		1324.1
(3) 		985

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18745
1 2 3 4 5 6 range
A 10148.7
(-2.5)
P 		8583.2
(-3)
P 		26574.9
(3)
P 		24475.5
(2.3)
P 		13600
(-1.3)
P 		10806.8
(-2.3)
P 		17992
B 9490.1
(-3)
P 		10127.2
(-2.8)
P 		26764.3
(3)
P 		23702.9
(1.9)
P 		14194.6
(-1.4)
P 		11407.5
(-2.3)
P 		17274
C 8183.7
(-3)
P 		10718.6
(-2.2)
P 		24211.2
(2.1)
P 		26929.1
(3)
P 		13007.4
(-1.5)
P 		11261.9
(-2)
P 		18745
avr 9274.2
(-3) 		9809.7
(-2.8) 		25850.1
(3) 		25035.8
(2.7) 		13600.7
(-1.4) 		11158.7
(-2.3) 		16576
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 469
(3)
P 		158.7
(-2)
P 		97.8
(-3)
P 		192.6
(-1.5)
P 		371
B 344.7
(3)
P 		196.3
(-0.2)
P 		66.4
(-3)
P 		260.9
(1.2)
P 		278
C 432
(3)
P 		251.3
(-0.5)
P 		124.6
(-3)
P 		241.5
(-0.7)
P 		307
avr 415.2
(3) 		202.1
(-1) 		96.3
(-3) 		231.7
(-0.5) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4628
1 2 3 4 5 6 range
A 1870.8
(-3)
P 		3052.6
(-1.4)
P 		5787.4
(2.4)
P 		6207.6
(3)
P 		4103.9
(0.1)
P 		2631.1
(-1.9)
P 		4337
B 3302.1
(-3)
P 		3370.9
(-2.9)
P 		6499.2
(3)
P 		6278.1
(2.6)
P 		5767.1
(1.6)
P 		4253.8
(-1.2)
P 		3197
C 3033.3
(-3)
P 		3270.6
(-2.5)
P 		6162.2
(3)
P 		5415.5
(1.6)
P 		4209
(-0.7)
P 		3770
(-1.6)
P 		3129
avr 2735.4
(-3) 		3231.4
(-2.1) 		6149.6
(3) 		5967.1
(2.7) 		4693.3
(0.4) 		3551.6
(-1.6) 		3414
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193272_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14624
Sequence Type Exemplar sequence
Representative Public ID F15B9.1 NCBI
Target Description F15B9.1 /REP_DB=WormBase Gene ID /WP=CE09406 /GEN=far-3 /TR=Q19478 /GB=CAB01422.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=O.volvulus antigen peptide like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073850 NCBI Caenorhabditis elegans Fatty Acid/Retinol binding protein family member (far-3) (far-3) mRNA, complete cds. 11/11 None
SNAP00000032631 ENSEMBL cdna:SNAP chromosome:CEL140:V:12999471:13000103:-1 11/11 None
GENEFINDER00000032638 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12999471:13000103:-1 11/11 None
F15B9.1 ENSEMBL cdna:known chromosome:CEL140:V:12999448:13000115:-1 gene:F15B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12999470-13000103(-) 100.0 100.0
Public Domain and Genome References
Gene Title O.volvulus antigen peptide like
Gene Symbol far-3
Ensembl F15B9.1
Entrez Gene 179785 Entrez gene
SwissProt Q19478 EMBL-EBI
WormBase CE09406 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01422 Hypothetical protein F15B9.1 [Caenorhabditis elegans] ref|NP_506251.1| Fatty Acid/Retinol binding protein family member (far-3) [Caenorhabditis elegans] 4.0E-82
blast CAE64698 Hypothetical protein CBG09481 [Caenorhabditis briggsae] 2.0E-56
blast CAE64699 Hypothetical protein CBG09482 [Caenorhabditis briggsae] 1.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR008632 EMBL-EBI Nematode fatty acid retinoid binding 1.9E-91
Sequence
Target Sequence 
>C. ELEGANS:193272_S_AT
tcttttcgctttcaacgttttctgcttggttcttctccgtttctcagctgctgctccagc
tgatgattcttctccattctctcaaattttgaagcaacacaaagatctccttccatccga
agttgttcaagcctatcaggatttgtctccagaagagaaggctgcattgaaggatgtatt
caagaactacaagagctacaaaaacgaaggagaattgattgctgctctcaaagaaaagtc
ttcaagcttgggagaaaaggctgagaagcttcaagctaagctccaaaagaaggttgatgc
attgagcccaaaaccaaaggattttgttaacgagctcattgctggaggacgtggtcttta
tgctcgttctgttaatggagagaagatctcagtttccgagatcaagcttctcattgaaac
ccaagttgctgcatacaaggcattgccagctgaggctcaagacgagttgaagaaaaattt
cggaggagtcgccaagtttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTTCGCTTTCAACGTTTTCTGC 9 613 21 Antisense
TTCAACGTTTTCTGCTTGGTTCTTC 305 685 31 Antisense
AAGCAACACAAAGATCTCCTTCCAT 675 151 112 Antisense
ATCTCCTTCCATCCGAAGTTGTTCA 580 31 125 Antisense
CAAGCCTATCAGGATTTGTCTCCAG 543 185 148 Antisense
GATTTTGTTAACGAGCTCATTGCTG 559 429 340 Antisense
GAGGACGTGGTCTTTATGCTCGTTC 687 403 365 Antisense
GTTTCCGAGATCAAGCTTCTCATTG 429 451 412 Antisense
GTTGCTGCATACAAGGCATTGCCAG 497 439 445 Antisense
GGCATTGCCAGCTGAGGCTCAAGAC 595 537 459 Antisense
TTTCGGAGGAGTCGCCAAGTTTTTG 348 455 498 Antisense
Sequence Source Affymetrix Proprietary Database