[Home] | [Total List]

[193271_s_at]

Description F11C1.5A /REP_DB=WormBase Gene ID /WP=CE20666 /TR=Q19346 /GB=CAA91030.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=nir like gene involved in denitrification
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 81      6grp_total > 46      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 353.1
(0.9)
P 		225.2
(-2.6)
P 		209.2
(-3)
P 		431.3
(3)
P 		222
B 327.6
(1)
P 		184.7
(-3)
P 		211.5
(-2.3)
P 		401.5
(3)
P 		217
C 418.6
(3)
P 		186.3
(-3)
P 		243.9
(-1.5)
P 		373.9
(1.8)
P 		232
avr 366.4
(1.9) 		198.7
(-3) 		221.5
(-2.3) 		402.2
(3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 272.2
(-0.5)
P 		324.1
(1.6)
P 		240.8
(-1.8)
P 		248.5
(-1.5)
P 		211.9
(-3)
P 		358.5
(3)
P 		147
B 245.5
(0.5)
P 		226.3
(-0.5)
P 		291.3
(3)
P 		291.2
(3)
P 		179.6
(-3)
P 		270.4
(1.9)
P 		112
C 382.7
(3)
P 		277.1
(-0.1)
P 		290
(0.2)
P 		271.6
(-0.3)
P 		181.5
(-3)
P 		263.8
(-0.5)
P 		201
avr 300.1
(3) 		275.8
(1.7) 		274
(1.6) 		270.4
(1.4) 		191
(-3) 		297.6
(2.9) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 128.6
(3)
P 		48.9
(-3)
P 		54.7
(-2.6)
P 		63.1
(-1.9)
P 		80
B 104.5
(3)
P 		45.6
(-3)
P 		49
(-2.7)
P 		85.6
(1.1)
P 		59
C 138.6
(3)
P 		53.6
(-3)
P 		85
(-0.8)
P 		63
(-2.3)
P 		85
avr 123.9
(3) 		49.4
(-3) 		62.9
(-1.9) 		70.6
(-1.3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 50.2
(-3)
P 		115.3
(3)
P 		52.4
(-2.8)
P 		63
(-1.8)
P 		63.9
(-1.7)
P 		87.3
(0.4)
P 		65
B 85.4
(-0.1)
P 		75.3
(-2.1)
P 		70.7
(-3)
P 		77.1
(-1.7)
P 		73
(-2.5)
P 		100.8
(3)
P 		30
C 141.8
(3)
P 		84.6
(-0.9)
P 		73.8
(-1.7)
P 		54.6
(-3)
P 		58.7
(-2.7)
P 		88.3
(-0.7)
P 		87
avr 92.5
(3) 		91.7
(2.8) 		65.6
(-2.8) 		64.9
(-3) 		65.2
(-2.9) 		92.1
(2.9) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 193271_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17887
Sequence Type Exemplar sequence
Representative Public ID F11C1.5A NCBI
Target Description F11C1.5A /REP_DB=WormBase Gene ID /WP=CE20666 /TR=Q19346 /GB=CAA91030.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=nir like gene involved in denitrification
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077759 NCBI Caenorhabditis elegans F11C1.5a (F11C1.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000035049 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12989413:12999491:1 11/11 None
SNAP00000035044 ENSEMBL cdna:SNAP chromosome:CEL140:X:12995729:12999491:1 11/11 None
F11C1.5a ENSEMBL cdna:known chromosome:CEL140:X:12991418:12999548:1 gene:F11C1.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181431 2 1 NM_077759 193271_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12991417-12999491(+) 99.96 100.0
Public Domain and Genome References
Ensembl F11C1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91030 Hypothetical protein F11C1.5a [Caenorhabditis elegans] ref|NP_510160.1| F11C1.5a [Caenorhabditis elegans] 0.0
blast CAE70359 Hypothetical protein CBG16916 [Caenorhabditis briggsae] 0.0
blast CAA91031 Hypothetical protein F11C1.5b [Caenorhabditis elegans] ref|NP_510161.1| F11C1.5b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:193271_S_AT
gacgcatcgacaaagttccagatccgggagctccacaaacaaagccaaaacgcctgaaag
tatgcttggatgtttctggttccatgtacagatttaatggatatgaccagagactcgtga
agtcacttgaagcagccttgatgacaatgactgcacttgatggaaaaacggacaaagtgc
agtacgacattattggacattctggagactctccatgcgtgtcatttgtaaagaccgatc
atcatcccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCATCGACAAAGTTCCAGATCC 231 381 4688 Antisense
GATCCGGGAGCTCCACAAACAAAGC 522 413 4708 Antisense
ACAAAGCCAAAACGCCTGAAAGTAT 484 111 4726 Antisense
AAGTATGCTTGGATGTTTCTGGTTC 553 157 4745 Antisense
GGATGTTTCTGGTTCCATGTACAGA 180 515 4755 Antisense
GATATGACCAGAGACTCGTGAAGTC 710 425 4787 Antisense
AAGTCACTTGAAGCAGCCTTGATGA 125 157 4807 Antisense
GCCTTGATGACAATGACTGCACTTG 611 281 4822 Antisense
ATTGGACATTCTGGAGACTCTCCAT 460 3 4879 Antisense
GACTCTCCATGCGTGTCATTTGTAA 174 375 4894 Antisense
GTAAAGACCGATCATCATCCCAAAA 639 461 4915 Antisense
Sequence Source Affymetrix Proprietary Database