[Home] | [Total List]

[193267_at] histidine acid phosphatase family (weak)

Description F13D11.1 /REP_DB=WormBase Gene ID /WP=CE04387 /TR=Q19390 /GB=AAA81702.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=histidine acid phosphatase family (weak)
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 93      6grp_total > 76      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1156
1 2 3 4 range
A 637.5
(-2.1)
P 		527.6
(-2.6)
P 		458.6
(-3)
P 		1614.5
(3)
P 		1156
B 619.5
(-2.3)
P 		514.6
(-3)
P 		524.9
(-2.9)
P 		1463.3
(3)
P 		949
C 689.3
(-1.6)
P 		559.4
(-2.6)
P 		505.6
(-3)
P 		1291.7
(3)
P 		786
avr 648.8
(-2) 		533.9
(-2.8) 		496.4
(-3) 		1456.5
(3) 		960

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 433.3
(0.9)
P 		288.6
(-3)
P 		395
(-0.1)
P 		431.6
(0.9)
P 		452.6
(1.4)
P 		511.2
(3)
P 		223
B 330.1
(-2.8)
P 		315.9
(-3)
P 		496.1
(-0.2)
P 		414.1
(-1.5)
P 		466.9
(-0.7)
P 		708.3
(3)
P 		392
C 301.1
(-3)
P 		388.5
(-1.9)
P 		414.1
(-1.6)
P 		409.3
(-1.7)
P 		404.7
(-1.8)
P 		799.2
(3)
P 		498
avr 354.8
(-2.6) 		331
(-3) 		435.1
(-1.2) 		418.3
(-1.5) 		441.4
(-1.1) 		672.9
(3) 		342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 232.1
(2.8)
P 		114.5
(-3)
P 		119.9
(-2.7)
P 		236.3
(3)
P 		122
B 197.6
(-0.6)
P 		127.1
(-2.8)
P 		121.6
(-3)
P 		311.8
(3)
P 		190
C 228.2
(3)
P 		160.8
(-3)
P 		176.2
(-1.6)
P 		217.8
(2.1)
P 		67
avr 219.3
(1.2) 		134.1
(-3) 		139.2
(-2.7) 		255.3
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 79.9
(-3)
P 		102.6
(-0.6)
P 		86
(-2.4)
P 		109.5
(0.1)
P 		136.6
(3)
P 		124.5
(1.7)
P 		57
B 114.8
(-2.6)
P 		105.2
(-3)
P 		120.5
(-2.4)
P 		109.7
(-2.8)
P 		189.7
(0.2)
P 		264.1
(3)
P 		159
C 111.6
(-2.1)
P 		118.5
(-1.8)
P 		105.4
(-2.3)
P 		82.3
(-3)
P 		131
(-1.4)
P 		267.5
(3)
P 		185
avr 102.1
(-2.9) 		108.8
(-2.6) 		104
(-2.8) 		100.5
(-3) 		152.4
(-0.4) 		218.7
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16237
Sequence Type Exemplar sequence
Representative Public ID F13D11.1 NCBI
Target Description F13D11.1 /REP_DB=WormBase Gene ID /WP=CE04387 /TR=Q19390 /GB=AAA81702.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=histidine acid phosphatase family (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076576 NCBI Caenorhabditis elegans F13D11.1 (F13D11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000005821 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5829416:5831864:1 11/11 None
F13D11.1 ENSEMBL cdna:known chromosome:CEL140:X:5829416:5831970:1 gene:F13D11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005818 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5829415-5831864(+) 100.0 100.0
Public Domain and Genome References
Gene Title histidine acid phosphatase family (weak)
Ensembl F13D11.1
Entrez Gene 180849 Entrez gene
SwissProt Q19390 EMBL-EBI
WormBase CE04387 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81702 Hypothetical protein F13D11.1 [Caenorhabditis elegans] ref|NP_508977.1| F13D11.1 [Caenorhabditis elegans] 0.0
blast CAE68807 Hypothetical protein CBG14759 [Caenorhabditis briggsae] 1.0E-166
blast BAE32478.1 unnamed protein product [Mus musculus] 5.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 8.4E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508977.1 1 376-398
F13D11.1 1 376-398
GENEFINDER00000005821 1 376-398
Sequence
Target Sequence 
>C. ELEGANS:193267_AT
gacttccgtacccagaatgggcgcgtgggtacgaaaatcgaattttgaatatgagttttt
tgattcacgatgcagttgttaaggttcaaaatgatagcgtcggagattatcacaacgaat
tggttatgtcgtattttgaaactcatctacagaaaaattcaacaaaaggagtttttatta
gtgggcacgacacaaacttagtgacaatttgggaatcacttcgcctagatggacatccag
aagacattccaaactacggagctcatattgctattgaaatgcatgagcctgtggggcaac
tgtccataaaatttttcttgtcgatgggctttaatcagacacgcgttgaacttcatccac
acttttgctcgcggagccaaaacaatgattgtacgtgggatgagtttcagaggcttgtga
agaaatcaagaaaaccaaaatctgattggattttcgagtgccaaggatatgaaaaagcaa
ctgaaccagtatcagcactaacaggttccatgattgttcttctatcaattttgattttat
ctacaattatcctcggtttcacgacgttctcctacaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTCCGTACCCAGAATGGGCGCG 510 371 638 Antisense
GTGGGCACGACACAAACTTAGTGAC 456 485 818 Antisense
ATCACTTCGCCTAGATGGACATCCA 653 27 852 Antisense
GACATTCCAAACTACGGAGCTCATA 500 369 880 Antisense
ATGAGCCTGTGGGGCAACTGTCCAT 287 45 920 Antisense
GATGGGCTTTAATCAGACACGCGTT 208 407 960 Antisense
TCAGACACGCGTTGAACTTCATCCA 50 625 972 Antisense
GTATCAGCACTAACAGGTTCCATGA 445 453 1126 Antisense
GTTCCATGATTGTTCTTCTATCAAT 389 441 1142 Antisense
CTACAATTATCCTCGGTTTCACGAC 376 225 1178 Antisense
GTTTCACGACGTTCTCCTACAAACG 429 449 1193 Antisense
Sequence Source Affymetrix Proprietary Database