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[193266_at] acetylglucosaminyltransferase-like domain

Description T09E11.9 /REP_DB=WormBase Gene ID /WP=CE13513 /TR=O02309 /GB=CAB03536.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase-like domain
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 90      6grp_total > 21      4grp_total > 35      6grp_high1_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 157.2
(-2.7)
P 		233.7
(3)
P 		153.5
(-3)
P 		208.3
(1.1)
P 		80
B 123.7
(-3)
P 		247.7
(3)
P 		138.6
(-2.3)
P 		132.7
(-2.6)
P 		124
C 122.8
(-3)
P 		182.8
(1.3)
P 		149.2
(-1.1)
P 		206.8
(3)
P 		84
avr 134.6
(-3) 		221.4
(3) 		147.1
(-2.1) 		182.6
(0.3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 119.7
(-0.2)
P 		144
(2.9)
P 		144.7
(3)
P 		120.4
(-0.1)
P 		130.1
(1.1)
P 		97.4
(-3)
P 		47
B 121.5
(0.9)
P 		127.4
(1.3)
P 		100.2
(-0.8)
P 		95.1
(-1.2)
P 		148.4
(3)
P 		72.5
(-3)
P 		76
C 123.6
(-0.6)
P 		139.9
(0.3)
P 		192.4
(3)
P 		115.8
(-1)
P 		116.1
(-1)
P 		77.1
(-3)
P 		115
avr 121.6
(0.7) 		137.1
(2.2) 		145.8
(3) 		110.4
(-0.3) 		131.5
(1.6) 		82.3
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 57.2
(3)
P 		50.7
(1.5)
P 		40.1
(-0.8)
P 		30.5
(-3)
P 		27
B 39.5
(-1)
P 		61.2
(3)
P 		32.1
(-2.3)
P 		28.3
(-3)
P 		33
C 40.7
(-1)
P 		52.6
(3)
P 		52
(2.8)
P 		34.9
(-3)
P 		18
avr 45.8
(0.7) 		54.8
(3) 		41.4
(-0.4) 		31.2
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 22.1
(-3)
P 		51.2
(3)
P 		31.5
(-1.1)
P 		30.5
(-1.3)
P 		39.3
(0.5)
P 		23.7
(-2.7)
P 		29
B 42.3
(-0)
P 		42.4
(0)
P 		24.3
(-3)
P 		25.2
(-2.9)
P 		60.3
(3)
P 		27
(-2.6)
P 		36
C 45.8
(2.3)
P 		42.7
(1.5)
P 		49
(3)
P 		23.3
(-3)
P 		37.6
(0.3)
P 		25.8
(-2.4)
P 		26
avr 36.7
(0.3) 		45.4
(2.9) 		34.9
(-0.2) 		26.3
(-2.8) 		45.7
(3) 		25.5
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1919
Sequence Type Exemplar sequence
Representative Public ID T09E11.9 NCBI
Target Description T09E11.9 /REP_DB=WormBase Gene ID /WP=CE13513 /TR=O02309 /GB=CAB03536.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=acetylglucosaminyltransferase-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060724 NCBI Caenorhabditis elegans T09E11.9 (T09E11.9) mRNA, complete cds. 11/11 None
T09E11.9 ENSEMBL cdna:known chromosome:CEL140:I:12355952:12357941:-1 gene:T09E11.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042473 8/11 Cross Hyb Matching Probes None
SNAP00000042462 1/11 Cross Hyb Matching Probes None
SNAP00000042463 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12355882-12357872(-) 100.0 100.0
Public Domain and Genome References
Gene Title acetylglucosaminyltransferase-like domain
Ensembl T09E11.9
Entrez Gene 188337 Entrez gene
SwissProt O02309 EMBL-EBI
WormBase CE13513 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03536 Hypothetical protein T09E11.9 [Caenorhabditis elegans] ref|NP_493125.1| T09E11.9 [Caenorhabditis elegans] 0.0
blast AAC26306 Hypothetical protein H41C03.3 [Caenorhabditis elegans] ref|NP_495166.2| H41C03.3 [Caenorhabditis elegans] 1.0E-167
blast CAB04881 Hypothetical protein T27F6.1 [Caenorhabditis elegans] ref|NP_493165.2| T27F6.1 [Caenorhabditis elegans] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 8.5E-110
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493125.1 1 12-30
T09E11.9 1 12-30
Sequence
Target Sequence 
>C. ELEGANS:193266_AT
gaatggcttggcggggcgaatgatgtggaactgctgcctgaagctcagaggcttgatgaa
gagaatttcaagtgggatccaaggtcgctgaaaatgtttccagatgaatcaaaagtggac
gaaacgatattgaatgagaagataaaattctcgaagggcggtgttcagggatcaatgtca
cgggccgccgttgattggatgactcgaaaagtgaacttgtccacttacatagatcaatgg
aatcagggaagatggggtgtggatgagatgctgatctccagtctgcaaatcagcgcgttt
ctcggaatgccgggacacttcacggatcaatgtctcaaggagggcaaggaaccgtttagg
atggtgcaatggaattttgaggatgaaagctactgtgcctctaaatacaaacgccacaat
gtttgcattctgggaattgaatatctgagatcggtcgcatcgtttccaactttgatgttt
aataagatgcttccaccctttgacaattccataatcgaatgtaccgctgagcttctctat
aatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGCTTGGCGGGGCGAATGATG 22 333 778 Antisense
GATGTGGAACTGCTGCCTGAAGCTC 189 409 799 Antisense
AGGGCGGTGTTCAGGGATCAATGTC 104 57 932 Antisense
CAATGTCACGGGCCGCCGTTGATTG 167 183 950 Antisense
GAGATGCTGATCTCCAGTCTGCAAA 27 397 1042 Antisense
AGTCTGCAAATCAGCGCGTTTCTCG 177 61 1057 Antisense
GGAATGCCGGGACACTTCACGGATC 695 525 1081 Antisense
TGAAAGCTACTGTGCCTCTAAATAC 697 571 1161 Antisense
GGTCGCATCGTTTCCAACTTTGATG 3 503 1230 Antisense
TAATAAGATGCTTCCACCCTTTGAC 133 635 1257 Antisense
GTACCGCTGAGCTTCTCTATAATCG 141 459 1298 Antisense
Sequence Source Affymetrix Proprietary Database