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[193265_at] IG superfamily repeats (I-type)

Description K10C3.3 /REP_DB=WormBase Gene ID /WP=CE12078 /GEN=zig-1 /TR=O02280 /GB=CAB05773.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=IG superfamily repeats (I-type)
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 33      6grp_total > 41      4grp_total > 53      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 785
1 2 3 4 range
A 1332.6
(3)
P 		1210.2
(2.1)
P 		994.2
(0.4)
P 		547.5
(-3)
P 		785
B 1260.9
(3)
P 		1118.6
(1.5)
P 		969.4
(-0.1)
P 		700.2
(-3)
P 		561
C 1248.8
(3)
P 		1243.4
(2.9)
P 		1105.1
(1.5)
P 		673.8
(-3)
P 		575
avr 1280.8
(3) 		1190.7
(2.2) 		1022.9
(0.6) 		640.5
(-3) 		640

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1460
1 2 3 4 5 6 range
A 1300
(0.1)
P 		1493.3
(0.9)
P 		2010.8
(3)
P 		1778
(2)
P 		945.3
(-1.4)
P 		550.5
(-3)
P 		1460
B 1437.9
(1)
P 		1547.3
(1.5)
P 		1872.2
(3)
P 		1477.3
(1.2)
P 		1083
(-0.6)
P 		568.9
(-3)
P 		1303
C 1540.6
(1.6)
P 		1532.9
(1.5)
P 		1816.9
(3)
P 		1750.4
(2.7)
P 		1063.3
(-0.9)
P 		643.9
(-3)
P 		1173
avr 1426.2
(0.8) 		1524.5
(1.3) 		1900
(3) 		1668.6
(1.9) 		1030.5
(-1) 		587.8
(-3) 		1312
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 405
1 2 3 4 range
A 485.2
(3)
P 		262.7
(-0.3)
P 		259.9
(-0.3)
P 		80.1
(-3)
P 		405
B 402.1
(3)
P 		276.3
(0)
P 		224.6
(-1.2)
P 		149.2
(-3)
P 		253
C 413.4
(3)
P 		357.5
(1.9)
P 		385.2
(2.4)
P 		113.6
(-3)
P 		300
avr 433.6
(3) 		298.8
(0.5) 		289.9
(0.3) 		114.3
(-3) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 239.6
(-1.4)
P 		531.1
(3)
P 		437.9
(1.6)
P 		450.9
(1.8)
P 		285.3
(-0.7)
P 		134
(-3)
P 		397
B 500.3
(2.7)
P 		515
(3)
P 		454.6
(1.8)
P 		391.3
(0.5)
P 		440
(1.5)
P 		212.2
(-3)
P 		303
C 571
(3)
P 		467.7
(1.3)
P 		462.4
(1.2)
P 		352
(-0.7)
P 		344.1
(-0.8)
P 		215.6
(-3)
P 		355
avr 437
(1.7) 		504.6
(3) 		451.6
(2) 		398.1
(1) 		356.5
(0.2) 		187.3
(-3) 		317
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1558
Sequence Type Exemplar sequence
Representative Public ID K10C3.3 NCBI
Target Description K10C3.3 /REP_DB=WormBase Gene ID /WP=CE12078 /GEN=zig-1 /TR=O02280 /GB=CAB05773.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=IG superfamily repeats (I-type)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060207(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060207 NCBI Caenorhabditis elegans 2 (Zwei) IG-domain protein family member (zig-1) (zig-1) mRNA, complete cds. 9/11 None
SNAP00000018521 ENSEMBL cdna:SNAP chromosome:CEL140:I:9855528:9857982:1 9/11 None
GENEFINDER00000018527 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9855528:9857982:1 9/11 None
K10C3.3 ENSEMBL cdna:known chromosome:CEL140:I:9855528:9858201:1 gene:K10C3.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9855458-9857409(+) 100.0 100.0
Public Domain and Genome References
Gene Title IG superfamily repeats (I-type)
Gene Symbol zig-1
Ensembl K10C3.3
Entrez Gene 192086 Entrez gene
SwissProt O02280 EMBL-EBI
WormBase CE30349 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05773 Hypothetical protein K10C3.3 [Caenorhabditis elegans] ref|NP_492608.2| 2 (Zwei) IG-domain protein family member (zig-1) [Caenorhabditis elegans] gb|AAL59606.1| secreted 2-immunoglobulin-domain protein ZIG-1 [Caenorhabditis elegans] 1.0E-128
blast CAE60263 Hypothetical protein CBG03839 [Caenorhabditis briggsae] 1.0E-106
blast NP_503523 Y32G9A.8 [Caenorhabditis elegans] gb|AAG53701.2| Hypothetical protein Y32G9A.8 [Caenorhabditis elegans] 9.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.083
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.3E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492608.2 1 232-254
K10C3.3 1 232-254
SNAP00000018521 1 232-254
GENEFINDER00000018527 1 232-254
Sequence
Target Sequence 
>C. ELEGANS:193265_AT
aactgcacatttcattcgatcttcagataatgaaaagctcgaagctgcgttgaatccaac
caagaaaaatgcgacatacacctttggatcaccatcagtgaaagatgccggcgagtacaa
atgtgagttggacacaccacacggaaagatcagccataaagtcttcatttattcaagacc
tgttgtacattctcacgaacattttactgagcacgaaggacatgaattccatttggaaag
cactggaactactgttgagaaaggagaatcagtgacattgacttgtccagtaacaggata
cccgaaaccagttgtcaaatggacaaaagattctgccccacttgctctcagtcaatcagt
ttcaatggaaggaagtactgtaattgttacaaatgctaattacacagatgctggaacata
ttcatgtgaagctgtaaatgagtatactgtaaatggaaaaacaagtaaaatgttattggt
cgttgataaaatggttgatgttagaagtgagtttacatattcttttctgaaaaaaatttc
aaaaaagcctcttagaaagttcgaagagccgaaaatccgcacctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGCACATTTCATTCGATCTTCA 299 143 192 Antisense
GCTCGAAGCTGCGTTGAATCCAACC 89 299 228 Antisense
GCGACATACACCTTTGGATCACCAT 535 289 262 Antisense
GATGCCGGCGAGTACAAATGTGAGT 267 415 295 Antisense
GTGAGTTGGACACACCACACGGAAA 290 481 314 Antisense
AGACCTGTTGTACATTCTCACGAAC 645 69 367 Antisense
GACTTGTCCAGTAACAGGATACCCG 417 371 471 Antisense
ATGGACAAAAGATTCTGCCCCACTT 244 53 510 Antisense
CCACTTGCTCTCAGTCAATCAGTTT 576 275 529 Antisense
GTGAGTTTACATATTCTTTTCTGAA 295 483 698 Antisense
TCGAAGAGCCGAAAATCCGCACCTT 59 601 752 Antisense
Sequence Source Affymetrix Proprietary Database