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[193261_at] Lectin C-type domain short and long forms

Description C31G12.2 /REP_DB=WormBase Gene ID /WP=CE15661 /TR=O17630 /GB=CAB03933.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster 6grp_total > 16      4grp_total > 44      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 35.1
(3)
A 		4.8
(-2.9)
A 		4.5
(-3)
A 		6.1
(-2.7)
A 		31
B 5.6
(-0.9)
A 		3.9
(-2.3)
A 		10.3
(3)
A 		3
(-3)
A 		7
C 4.9
(-2.7)
A 		41.7
(3)
A 		4.4
(-2.7)
A 		2.7
(-3)
A 		39
avr 15.2
(2.3) 		16.8
(3) 		6.4
(-1.8) 		3.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 47.8
(3)
A 		14.8
(-1.3)
A 		1.3
(-3)
A 		3.1
(-2.8)
A 		5.9
(-2.4)
A 		2
(-2.9)
A 		47
B 1.5
(-2.5)
A 		3.2
(0.5)
A 		4.6
(3)
A 		1.9
(-1.8)
A 		1.2
(-3)
A 		3.3
(0.7)
A 		3
C 3.6
(-1.4)
A 		6
(3)
A 		5
(1.2)
A 		5.3
(1.7)
A 		2.7
(-3)
A 		3.4
(-1.7)
A 		3
avr 17.6
(3) 		8
(-0.9) 		3.6
(-2.7) 		3.4
(-2.8) 		3.3
(-2.8) 		2.9
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.8
(3)
A 		1
(-2.9)
A 		1.2
(-2.8)
A 		0.9
(-3)
A 		12
B 1.8
(1)
A 		1
(-1.7)
A 		2.4
(3)
A 		0.6
(-3)
A 		2
C 1.6
(-2.4)
A 		12
(3)
A 		1.5
(-2.5)
A 		0.5
(-3)
A 		12
avr 5.4
(3) 		4.7
(2.1) 		1.7
(-1.7) 		0.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 8.8
(3)
A 		5.3
(0.5)
A 		0.3
(-3)
A 		0.8
(-2.6)
A 		1.8
(-1.9)
A 		0.5
(-2.9)
A 		9
B 0.5
(-3)
A 		1.1
(2.1)
A 		1.1
(2.1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.2
(3)
A 		1
C 1.3
(-0.3)
A 		1.8
(3)
A 		1.3
(-0.3)
A 		1.1
(-1.7)
A 		0.9
(-3)
A 		1.1
(-1.7)
A 		1
avr 3.5
(3) 		2.7
(1.2) 		0.9
(-2.8) 		0.8
(-3) 		1.1
(-2.3) 		0.9
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12657
Sequence Type Exemplar sequence
Representative Public ID C31G12.2 NCBI
Target Description C31G12.2 /REP_DB=WormBase Gene ID /WP=CE15661 /TR=O17630 /GB=CAB03933.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain short and long forms
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075154 NCBI Caenorhabditis elegans C31G12.2 (C31G12.2) mRNA, complete cds. 11/11 None
C31G12.2 ENSEMBL cdna:known chromosome:CEL140:V:18188685:18190834:-1 gene:C31G12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007430 8/11 Cross Hyb Matching Probes None
GENEFINDER00000007431 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18188684-18190834(-) 99.49 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain short and long forms
Ensembl C31G12.2
Entrez Gene 183091 Entrez gene
SwissProt O17630 EMBL-EBI
WormBase CE15661 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03933 Hypothetical protein C31G12.2 [Caenorhabditis elegans] ref|NP_507555.1| C31G12.2 [Caenorhabditis elegans] 1.0E-87
blast CAB04132 Hypothetical protein F16H6.2 [Caenorhabditis elegans] emb|CAB03936.1| Hypothetical protein F16H6.2 [Caenorhabditis elegans] ref|NP_507556.1| F16H6.2 [Caenorhabditis elegans] 5.0E-45
blast CAB04446 Hypothetical protein F49H6.1 [Caenorhabditis elegans] ref|NP_507305.1| F49H6.1 [Caenorhabditis elegans] 3.0E-41
Sequence
Target Sequence 
>C. ELEGANS:193261_AT
tccttattctcatacctgttgtcaattcatgtatccctactcagcaagtcgaaacgacaa
cttcgacaaccactaccaccaccacgacaacctccacgacaacaacgacacctattccat
gcccgacgggatgggaagaatttgaacggcctagcgggacatggtgcattaagatgtatg
ctgctctaggagatcgtgcaaacgcgataagtgcttgtgctgcggaggaagctgtcctga
gcggagtgcaaaatcaagcggagctggactacatgattaccgcattcaatgctgtggata
cgataatggctatggatacaacattttggattggcggtgaaaggacgtcagcatgtctaa
catcaggattgacagcgacatgcaccgcactgacatcttttgaatggacagacggctcaa
cgactggaactgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTATTCTCATACCTGTTGTCAA 130 593 20 Antisense
GTATCCCTACTCAGCAAGTCGAAAC 489 455 50 Antisense
GAAACGACAACTTCGACAACCACTA 512 357 70 Antisense
CCTATTCCATGCCCGACGGGATGGG 513 259 130 Antisense
TTGAACGGCCTAGCGGGACATGGTG 394 705 161 Antisense
GTATGCTGCTCTAGGAGATCGTGCA 484 455 195 Antisense
GCGATAAGTGCTTGTGCTGCGGAGG 651 289 223 Antisense
GAAGCTGTCCTGAGCGGAGTGCAAA 45 343 247 Antisense
GGAGCTGGACTACATGATTACCGCA 89 521 279 Antisense
GGATTGACAGCGACATGCACCGCAC 567 507 385 Antisense
GACGGCTCAACGACTGGAACTGATG 650 375 430 Antisense
Sequence Source Affymetrix Proprietary Database