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[193259_at]

Description C33D3.1 /REP_DB=WormBase Gene ID /WP=CE03041 /GEN=elt-2 /TR=Q18371 /GB=CAA90336.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein (GATA type)
Cluster 6grp_total > 19      4grp_total > 04      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 641
1 2 3 4 range
A 541.8
(-1.3)
P 		482.4
(-3)
A 		540.1
(-1.3)
A 		687
(3)
P 		205
B 717.8
(1)
P 		500.3
(-3)
A 		572.2
(-1.7)
A 		824.9
(3)
P 		325
C 509.2
(-2.2)
P 		420.3
(-3)
A 		511.2
(-2.1)
M 		1060.8
(3)
P 		641
avr 589.6
(-1.1) 		467.7
(-3) 		541.2
(-1.9) 		857.6
(3) 		390

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 450.8
(2.3)
A 		411.1
(0.4)
A 		337.3
(-3)
A 		466.5
(3)
A 		460
(2.7)
P 		391.7
(-0.5)
P 		129
B 453.5
(2.6)
P 		449.5
(2.4)
M 		460.1
(3)
A 		358.2
(-3)
P 		360.8
(-2.8)
P 		376.3
(-1.9)
P 		102
C 487.3
(2.7)
P 		354.2
(-3)
M 		491.8
(2.9)
A 		364.8
(-2.5)
M 		494.3
(3)
P 		447
(1)
P 		140
avr 463.9
(3) 		404.9
(-2.3) 		429.7
(-0) 		396.5
(-3) 		438.4
(0.7) 		405
(-2.2) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 197.3
(3)
P 		104.7
(-2.7)
A 		141.2
(-0.5)
A 		100.6
(-3)
P 		97
B 228.9
(3)
P 		123.6
(-3)
A 		132.6
(-2.5)
A 		175.8
(-0)
P 		105
C 168.6
(1.9)
P 		120.8
(-3)
A 		178.2
(2.9)
M 		178.9
(3)
P 		58
avr 198.3
(3) 		116.4
(-3) 		150.7
(-0.5) 		151.8
(-0.4) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 83.1
(-2.2)
A 		146.2
(3)
A 		73.5
(-3)
A 		118.3
(0.7)
A 		138.8
(2.4)
P 		95.4
(-1.2)
P 		73
B 157.8
(3)
P 		149.6
(2.2)
M 		111.7
(-1.4)
A 		94.9
(-3)
P 		146.6
(1.9)
P 		140.3
(1.3)
P 		63
C 180.6
(3)
P 		108.1
(-1.1)
M 		125.2
(-0.1)
A 		73.4
(-3)
M 		159.9
(1.8)
P 		149.6
(1.3)
P 		107
avr 140.5
(2.1) 		134.6
(1.4) 		103.5
(-2.1) 		95.5
(-3) 		148.4
(3) 		128.4
(0.7) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16720
Sequence Type Exemplar sequence
Representative Public ID C33D3.1 NCBI
Target Description C33D3.1 /REP_DB=WormBase Gene ID /WP=CE03041 /GEN=elt-2 /TR=Q18371 /GB=CAA90336.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=zinc finger protein (GATA type)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077354
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000027789 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10481168:10483113:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077354 8/11 Cross Hyb Matching Probes None
SNAP00000027785 8/11 Cross Hyb Matching Probes None
C33D3.1 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10475454-10483113(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T19677 hypothetical protein C33D3.1 - Caenorhabditis elegans 0.0
blast CAA90029 Hypothetical protein C33D3.1 [Caenorhabditis elegans] ref|NP_509755.2| Erythroid-Like Transcription factor family member (elt-2) [Caenorhabditis elegans] sp|Q10655|ELT2_CAEEL Transcription factor elt-2 gb|AAC36130.1| GATA-factor [Caenorhabditis elegans] 0.0
blast CAE70591 Hypothetical protein CBG17257 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 1.6E-19
Sequence
Target Sequence 
>C. ELEGANS:193259_AT
tgcaatgcttgcgggctttacttcaaactccatcacatccctcggccgacctcaatgaag
aaagaaggtgctttacagacaagaaagagaaaatcaaaaagcggagactcttccacacca
tcaacgtcacgggcccgagaaaggaagtttgagagagcctcttcttcgaccgaaaaggct
caaaggtcatctaaccggcgtgcgggaagtgcaaaagcagaccgagaactgagcactgct
gccgtcgcagctgcgactgccacatatgtgtcacatgccgacttgtatcccgtttcctca
gctgccgtcaccttgccagatcaaacgtacagtaattactatcaatggaacactgccgct
acagctgggttgatgatggttccaaacgatcaaaactacgtgtatgcagcaacaaactac
cagactggcctaagacctgccgatgtgagtatgaagctgtttgccacttcctcgcttatc
ccaccggttgagttgcttttcccaatattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATGCTTGCGGGCTTTACTTCA 357 577 1252 Antisense
GTTTGAGAGAGCCTCTTCTTCGACC 363 451 1398 Antisense
GGCTCAAAGGTCATCTAACCGGCGT 314 525 1428 Antisense
ACCGAGAACTGAGCACTGCTGCCGT 433 87 1472 Antisense
AGCTGCGACTGCCACATATGTGTCA 349 81 1500 Antisense
ATGTGTCACATGCCGACTTGTATCC 81 51 1517 Antisense
GTCACCTTGCCAGATCAAACGTACA 614 465 1558 Antisense
ACTGCCGCTACAGCTGGGTTGATGA 356 99 1603 Antisense
ACTGGCCTAAGACCTGCCGATGTGA 184 97 1675 Antisense
GTATGAAGCTGTTTGCCACTTCCTC 457 455 1700 Antisense
GGTTGAGTTGCTTTTCCCAATATTT 16 509 1737 Antisense
Sequence Source Affymetrix Proprietary Database