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[193258_at] growth arrest protein extracellular domain

Description F27E5.4 /REP_DB=WormBase Gene ID /WP=CE01565 /TR=Q09553 /GB=CAA88466.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=growth arrest protein extracellular domain
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_high_8_8 > 46      6grp_highest_nonorm > 53      6grp_total > 81      4grp_total > 49      6grp_cgc > 74      6grp_high1_sub > 02_03_04_05      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1938
1 2 3 4 range
A 40.8
(-3)
A 		1874.3
(3)
P 		1781.8
(2.7)
P 		94
(-2.8)
P 		1834
B 49.5
(-3)
P 		1943.6
(3)
P 		1606.6
(1.9)
P 		84.6
(-2.9)
P 		1894
C 42.1
(-3)
A 		1979
(3)
P 		1721
(2.2)
P 		124
(-2.7)
P 		1937
avr 44.1
(-3) 		1932.3
(3) 		1703.1
(2.3) 		100.9
(-2.8) 		1888

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 743
1 2 3 4 5 6 range
A 609.3
(-2.6)
P 		1206.3
(3)
P 		683
(-1.9)
P 		1093.6
(1.9)
P 		945.1
(0.6)
P 		563.4
(-3)
P 		643
B 565.1
(-2.4)
P 		1082.1
(3)
P 		796.1
(0)
P 		1048
(2.6)
P 		897.3
(1.1)
P 		504.4
(-3)
P 		578
C 593.6
(-2.6)
P 		1072.9
(1.5)
P 		746.7
(-1.3)
P 		1247.3
(3)
P 		1049.9
(1.3)
P 		547.5
(-3)
P 		700
avr 589.3
(-2.5) 		1120.4
(2.9) 		741.9
(-0.9) 		1129.6
(3) 		964.1
(1.3) 		538.4
(-3) 		591
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 586
1 2 3 4 range
A 14.9
(-3)
A 		406.9
(2.2)
P 		465.8
(3)
P 		13.8
(-3)
P 		452
B 15.8
(-3)
P 		480
(3)
P 		372.3
(1.6)
P 		18
(-3)
P 		464
C 13.9
(-3)
A 		569
(2.7)
P 		599.8
(3)
P 		20.9
(-2.9)
P 		586
avr 14.9
(-3) 		485.3
(3) 		479.3
(2.9) 		17.6
(-3) 		470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 112.3
(-3)
P 		429
(3)
P 		148.7
(-2.3)
P 		277.4
(0.1)
P 		285.2
(0.3)
P 		137.2
(-2.5)
P 		317
B 196.6
(-2.7)
P 		360.2
(2.9)
P 		193.3
(-2.8)
P 		277.6
(0)
P 		364.6
(3)
P 		188.1
(-3)
P 		177
C 220
(-1.6)
P 		327.4
(2.5)
P 		190.1
(-2.7)
P 		250.8
(-0.4)
P 		339.7
(3)
P 		183.3
(-3)
P 		156
avr 176.3
(-2.8) 		372.2
(3) 		177.4
(-2.8) 		268.6
(-0.1) 		329.8
(1.7) 		169.5
(-3) 		203
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 193258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3641
Sequence Type Exemplar sequence
Representative Public ID F27E5.4 NCBI
Target Description F27E5.4 /REP_DB=WormBase Gene ID /WP=CE01565 /TR=Q09553 /GB=CAA88466.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=growth arrest protein extracellular domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063785 NCBI Caenorhabditis elegans PHarynx-associated GAS (growth arrest protein) related family member (phg-1) (phg-1) mRNA, complete cds. 11/11 None
SNAP00000023299 ENSEMBL cdna:SNAP chromosome:CEL140:II:10137606:10138963:1 11/11 None
GENEFINDER00000023304 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10137579:10138963:1 11/11 None
F27E5.4 ENSEMBL cdna:known chromosome:CEL140:II:10137567:10139113:1 gene:F27E5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10134857-10138960(+) 100.0 100.0
Public Domain and Genome References
Gene Title growth arrest protein extracellular domain
Gene Symbol phg-1
Ensembl F27E5.4
Entrez Gene 185024 Entrez gene
SwissProt Q09553 EMBL-EBI
WormBase CE30964 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88466 Hypothetical protein F27E5.4 [Caenorhabditis elegans] ref|NP_496186.2| PHarynx-associated GAS (growth arrest protein) related family member (phg-1) [Caenorhabditis elegans] sp|Q09553|GAS1_CAEEL Growth-arrest-specific protein 1 homolog precursor (Pharynx associated gas1 homolog) 1.0E-130
blast CAA88466 Hypothetical protein F27E5.4 [Caenorhabditis elegans] ref|NP_496186.2| PHarynx-associated GAS (growth arrest protein) related family member (phg-1) [Caenorhabditis elegans] sp|Q09553|GAS1_CAEEL Growth-arrest-specific protein 1 homolog precursor (Pharynx associated gas1 homolog) 1.0E-125
blast CAE57837 Hypothetical protein CBG00864 [Caenorhabditis briggsae] 1.0E-111
blast CAE57837 Hypothetical protein CBG00864 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:193258_AT
gttagcaccgttgatggctgcttgctccactaacacatgtcaaccccaatgcagaagcgc
tgttcttaatgtctatcagaataaactcggcagaattcttttgagatctgatgccacttg
catcccaggacgtgacgagctcagaacatgcaacttccttccagccgaatccacagttca
ctgcagtctcggtaaactggcatgtgaaggagatctccagtgtaactcaaagttcggagt
cttcatgtctgaatgtgaagctgatgctgccagaggagcttgtaccgacaaatgtaagac
attgttgaatcaaactattgagacatcagtcggaagtgtgttctccaactgtacatgcac
tgctagagacgatcaattgtgcacaaacttgaaagacaacttgctcggagtatgcttgaa
aaataccccgggagtcaccttgtccccatccgacaactccatcacagatgctccaggagg
caacgatttggccgattcatcagtcggtcacggattcaatattctctctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAGCACCGTTGATGGCTGCTTGC 545 445 444 Antisense
TGCTTGCTCCACTAACACATGTCAA 141 579 462 Antisense
GTCAACCCCAATGCAGAAGCGCTGT 333 463 482 Antisense
GAAGCGCTGTTCTTAATGTCTATCA 57 345 497 Antisense
CACTTGCATCCCAGGACGTGACGAG 365 197 558 Antisense
CTCAGAACATGCAACTTCCTTCCAG 639 227 583 Antisense
GAATCCACAGTTCACTGCAGTCTCG 140 329 610 Antisense
GTGTGTTCTCCAACTGTACATGCAC 638 487 779 Antisense
GAGGCAACGATTTGGCCGATTCATC 435 405 920 Antisense
GATTCATCAGTCGGTCACGGATTCA 551 431 937 Antisense
CACGGATTCAATATTCTCTCTGCCA 361 199 952 Antisense
Sequence Source Affymetrix Proprietary Database